Gene Ksed_12050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_12050 
Symbol 
ID8372713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp1229831 
End bp1231108 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content72% 
IMG OID644991483 
Productglycerophosphoryl diester phosphodiesterase 
Protein accessionYP_003149007 
Protein GI256825047 
COG category[C] Energy production and conversion 
COG ID[COG0584] Glycerophosphoryl diester phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.0051177 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.272152 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACAACT CAACGCGCTC TGCCGCCTCC CTCCTCCTGA CCGCCACCGG ACTGGCCCTC 
GTGACCGCCG CCCCCGCCAC CGCCACCGGC GGTGACGGCA CGTCGCACCC CCAGACCGCA
CACCCCGTCT TCACGGCCGA GAAGCCGTGG GTCATCGGCC ACCGCGGGGC CTCCGGGCAC
CGGCCCGAAC ACACGCTCGA GGCCTACGAG CTGGCCGTGC GGATGGGGGC CGACTTCTTC
GAGCCCGACC TCGTCAGCAC CCGGGACGGC GTCCTGGTCT GCCGCCACGA GAACGAGATC
TCCGGGACCA CGGACGTCGC CGACCACCCG GAGTTCGCCG ACCGTCGGAC CACCAAGACC
ATCGACGGCG TCGAGCTCAC CGGCTGGTTC ACCGAGGACT TCACGCTGGC CGAACTCAAG
ACGCTCCGCG CGGTCGAGCG CATCCCCGCC GAGCGCCCCG GCAACACCCG CTACGACGGC
CAGTTCGAGG TGGCCACCTT CGCGGAGGTG CTCGAGCTGC GCGAGCGGCT CTCGGCCGAG
ACCGGGCGCG AGATCGGCAT CATCCCGGAG GTCAAGCACC CCACCTACTT CGACGGCCTC
GGACTGTCCA TGGAGGAGGG TCTGGTCGAG CAGCTGCGTG CGGCGCACCT GGACCACGCG
GACGCGCCGG TGCACGTCCA GAGCTTCGAG CTGCAGAACC TCGTGGACCT CAACCGCTCG
TTGGGTGCCG AGGTGCCGCT GGTCTTCCTG ACCGCGTCCG AGGGACAGCC GTGGGACTTG
GAGTCCGCCG GCGACCCCCG CACCTATGCG GACCTCATGA AACCCGAGGG GCTCAACGAG
CTGGCCCGGG ACATCGACGC CATCGGCCCC GAGCGCACGC TGGTCGTCCC CGAGGAGGAC
GGGGTGCTCG GGGAGCCGAC CTCGTTGGTC GCCGACGCGC ACGCCGCGGG CCTCGCCGTG
ACGCCCTACA CCTTCCGGGC GGAGAACGCC TTCCTGCCCG AGTCGCTGCG CAGCTCGCAG
GACCCGGCCG AGCTGGGGGA CATGGACACC CTGGTCCGTG CCCACCTCGA GGCTGGTGTC
GACGGGGTCT TCTCCGACCA GCCGGGGTTG GCGGTCACCA CCCGTGACGC CTGGCGTGAG
GAGCAGGGCC CCATCATCGA CACCGGTGTG GCCGCGCCCG CGCAGGGTCT TCCGAGCGCG
CTTCCCGGCC TGTTCGCCGG CGCCGGGGCA CTTGCGCTGG GCGCCCTCCT GGTGCGGCAG
GGTGCGCGTC GGGCCTGA
 
Protein sequence
MDNSTRSAAS LLLTATGLAL VTAAPATATG GDGTSHPQTA HPVFTAEKPW VIGHRGASGH 
RPEHTLEAYE LAVRMGADFF EPDLVSTRDG VLVCRHENEI SGTTDVADHP EFADRRTTKT
IDGVELTGWF TEDFTLAELK TLRAVERIPA ERPGNTRYDG QFEVATFAEV LELRERLSAE
TGREIGIIPE VKHPTYFDGL GLSMEEGLVE QLRAAHLDHA DAPVHVQSFE LQNLVDLNRS
LGAEVPLVFL TASEGQPWDL ESAGDPRTYA DLMKPEGLNE LARDIDAIGP ERTLVVPEED
GVLGEPTSLV ADAHAAGLAV TPYTFRAENA FLPESLRSSQ DPAELGDMDT LVRAHLEAGV
DGVFSDQPGL AVTTRDAWRE EQGPIIDTGV AAPAQGLPSA LPGLFAGAGA LALGALLVRQ
GARRA