Gene Ksed_09110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_09110 
Symbol 
ID8372420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp928541 
End bp929809 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content68% 
IMG OID644991192 
ProductATP-dependent Clp protease ATP-binding subunit ClpX 
Protein accessionYP_003148722 
Protein GI256824762 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.141535 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGCA GCGCGGGGAG CGGAGACTTC CTGACCTGTT CCTTCTGTGG CAAGAGCCAG 
AAGCAGGTGC GCAAGCTCAT CGCCGGGCCC AACGTCTACA TCTGCGACGA GTGCATCGAG
CTCTGCAACG AGATCATCGA GGAGGAGTTC CCCCTCGCCT CGGTGGAGAA GCTGGAGAAG
GTGCCGACCC CCCGGGAGAT CCACGCCTTC CTGGAGACCT ACGTGGTGGG TCAGGACGAG
GCGAAGCGGG CGCTGGCGGT CGCGGTGTAC AACCACTACA AGCGGGTCGA CGCCGAGCGG
TCCACGGACC CTGAGGCCCC CGAGGTGGCC AAGAGCAACA TCCTGATGAT CGGGCCGACC
GGTACCGGCA AGACCTACCT CGCGCAGACG CTGGCCAAGC TCCTGCAGGT GCCCTTCGCC
ATCGCCGACG CCACCGCCCT GACCGAGGCC GGGTACGTGG GCGAGGACGT CGAGAACATC
CTGGTGAAGC TCATCCAGGC CGCCGACGGC GACATCGCCC GCGCCGAGAC CGGCATCATC
TACATCGACG AGATCGACAA GATCACCCGC AAGAGCGAGA ACCCCTCGAT CACGCGGGAC
GTCTCCGGCG AGGGGGTGCA GCAGGCGCTG CTGAAGATCC TCGAGGGGAC GGTGGCCTCG
GTGCCGCCCC AGGGTGGGCG GAAGCACCCC CACCAAGAGT TCGTGCAGAT CGACACCCGC
AACATCCTCT TCATCGTCGG GGGTGCCTTC GCCGGGCTGG ACGACATCGT GGCCGCCCGG
GAGGGCAAGG GTGGCCTCGG CTTCGGTGCC AACCTGTCGG TGCGCCGGGA GGAGGGCGAC
CTCCTGCGCC AGATCCGTCC GGAGGACCTG GTGAACTTCG GCCTCATCCC GGAGTTCATC
GGCCGGGTGC CGGTCGTCGC GGCCGTGAGC CCGCTGGACG CCGACGCGCT GGTGGACATC
CTCACCGGGC CGCGCAACGC CCTGGTGAGG CAGTACCAGC ACCTGTTCCG GCTCGATGGG
GTGGAGCTCG AGTTCACCGA GGACGCCGTG CGGGCCGTCG CGGAGCAGGC GATGCTCCGC
CGCACCGGCG CGCGGGGACT ACGCGCCATC ATGGAGGAGG TGCTGCAGCC GGTGATGTTC
GACGTCCCCA GCGACGACCG CATCGAGCGC GTCGTGGTCA CCGCCGAGGT GGTGGCCGAC
AACGTGAACC CCACGATTGT GCGCCGCGAG ACGAAGTCGA CCAAGCGCCC CAAGCGCAAG
AGCGCCTGA
 
Protein sequence
MARSAGSGDF LTCSFCGKSQ KQVRKLIAGP NVYICDECIE LCNEIIEEEF PLASVEKLEK 
VPTPREIHAF LETYVVGQDE AKRALAVAVY NHYKRVDAER STDPEAPEVA KSNILMIGPT
GTGKTYLAQT LAKLLQVPFA IADATALTEA GYVGEDVENI LVKLIQAADG DIARAETGII
YIDEIDKITR KSENPSITRD VSGEGVQQAL LKILEGTVAS VPPQGGRKHP HQEFVQIDTR
NILFIVGGAF AGLDDIVAAR EGKGGLGFGA NLSVRREEGD LLRQIRPEDL VNFGLIPEFI
GRVPVVAAVS PLDADALVDI LTGPRNALVR QYQHLFRLDG VELEFTEDAV RAVAEQAMLR
RTGARGLRAI MEEVLQPVMF DVPSDDRIER VVVTAEVVAD NVNPTIVRRE TKSTKRPKRK
SA