Gene Ksed_02880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_02880 
Symbol 
ID8371800 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp280219 
End bp282060 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content73% 
IMG OID644990586 
ProductABC-type multidrug transport system, ATPase and permease component 
Protein accessionYP_003148132 
Protein GI256824172 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTGA CGGTCACCCC CATGCACGCG ATGGGCCCCA CCGGCGGTGG TGGCCCCGGG 
CGCCGCGGAC CGCAGAAGAT CAGCCGCGCC GACCGCGCCC AGCTCGCGCA GCGGCCCGTG
GAGTACGGGC GCGTGGTCGC GCTCTTCCGC CCCCACGGCC GCACTCTGGC CGTGGTCACC
GCCATCATCG TGCTCACCTC GGCGGTGGCG ATGGCCCAGC CCTTCCTGGT GCGTGAGGCC
GTGGACGTCG CGATCCCGCA GCAGGACGTG CGCCTGCTTC TCCTCGTGGT CGGCGGCATG
GTGGGCGTCG CCGCCGTCAC GGCCATGCTC GGGGTGGTGC AGACCTGGAT GGCCGCGCAG
GTGGGCCAGG AGGTCATGCA CACCCTGCGC TCGCGGCTGT TCGCCCACCT GCAGGGCCAG
TCGTTCTCGT TCTTCACCCG CGCCCGCGCC GGCGAGGTGC AGTCGCGCCT CATCAACGAC
GTCGGCGGCA TGCAGGGCGT CGTGACCACC ACGGCCACCT CCACCGCCAG CAACGTCACC
ACGGCCGTGG CGACGATGGT GGCCATGCTC GCGCTCTCCT GGCGGCTCTC CCTCATCTCG
CTGGTGGTCG TGCCGCCGGC CATCTGGCTC ACGCGCAAGG TCGCCCTGCT GCGGCGGGAG
ATCACCTCCC AGCAGCAGGC GGCGCTGGCG GACCTGCACG TCCGCATCGA GGAGGGGTTG
AGCGTCAGCG GGGTGCGGCT GGCCAAGACC CTGGGCACCA CCCGGCAGGA CGCCGCGCGC
TTCGACGAGG TGAGCCACGG CCTCATCGAC CTCGAGATGC GCGCCCAGCT GGCGGGCCGC
TGGCGGATGG CGACCATGCA GATCGTCTTC GCCGCCATCC CCGCGGCCAT CTACCTGGCG
GCGGGTCTCC CCGCGACCTC CGGGGGCATG ACGATCGGCA CGCTCATCGC GTTCACCACG
CTCCAGGCGG GGATCTTCCG TCCGCTCATG GGGCTGCTGA ACGTCGGCGC GCAGTGGGTG
AGCTCGATGG CGCTGTTCAG CCGCGTCTTC GAGTACCTCG ACCTGGAGCC CGACGTGGTC
CCGCCGGCCG ACCCCGTGCC GCTCGACCCC ACCGCCGTGC GCGGTGACGT CCGGCTCGAT
GCGGTGAGCT TCCGCTACGC GGGCAGCGGC CGCGACGCCT TGCGTGAGGT CTCGGTCGAG
GTCCCTGCCG GCAGCTCGCT GGCGCTGGTG GGGCACACCG GGTCGGGCAA GTCGACCCTC
GCGGCCCTCG TCTCGCGCCT GTACGACCCC GCCGCCGGCC GCATCACGAT CGACGGGGTG
GACGTCCGCG AGCTCGACCC GGAGGTGCTC GCCCGCATCG TCGGGGTGGT GAGCCAGGAG
ACCTACCTCG TGCACGCCAG CATCCGGGAG AACCTGCTGC GGGCGGCACC CGAGGCGACC
GAGGTGGACC TGTGGCGGGC GCTCGGCGCG GCCCAGGTGG CCGACCTGGT CGCGGGGCTG
CCGGACGGGC TGGACACGCT GGTGGGCTCT CGTGGCTACC GCTTCTCCGG GGGCGAGCAG
CAGCGCCTGG CCATCGCGCG GACGATCCTG CGCGACCCGC CGGTGCTGGT GCTCGACGAG
GCGACCAGCG CCTTGGACAA CGCGACCGAG CGGGCGCTGC AGCAGGCCCT GGACACGGTC
TCCCGGGGGC GGACCACGAT CACCATCGCC CACCGGCTGT CCACCGTGGA GGCCGCCGAC
CAGATCGTGG TGCTCGCCGA GGGGCGGGTG GCCGAGCGGG GCACCCACGC CGAGCTGCTG
GCGCGCGACG GCGTGTACGC GGACCTGGCG CTGGTGGCCT GA
 
Protein sequence
MPVTVTPMHA MGPTGGGGPG RRGPQKISRA DRAQLAQRPV EYGRVVALFR PHGRTLAVVT 
AIIVLTSAVA MAQPFLVREA VDVAIPQQDV RLLLLVVGGM VGVAAVTAML GVVQTWMAAQ
VGQEVMHTLR SRLFAHLQGQ SFSFFTRARA GEVQSRLIND VGGMQGVVTT TATSTASNVT
TAVATMVAML ALSWRLSLIS LVVVPPAIWL TRKVALLRRE ITSQQQAALA DLHVRIEEGL
SVSGVRLAKT LGTTRQDAAR FDEVSHGLID LEMRAQLAGR WRMATMQIVF AAIPAAIYLA
AGLPATSGGM TIGTLIAFTT LQAGIFRPLM GLLNVGAQWV SSMALFSRVF EYLDLEPDVV
PPADPVPLDP TAVRGDVRLD AVSFRYAGSG RDALREVSVE VPAGSSLALV GHTGSGKSTL
AALVSRLYDP AAGRITIDGV DVRELDPEVL ARIVGVVSQE TYLVHASIRE NLLRAAPEAT
EVDLWRALGA AQVADLVAGL PDGLDTLVGS RGYRFSGGEQ QRLAIARTIL RDPPVLVLDE
ATSALDNATE RALQQALDTV SRGRTTITIA HRLSTVEAAD QIVVLAEGRV AERGTHAELL
ARDGVYADLA LVA