Gene Ksed_02220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_02220 
Symbol 
ID8371734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp220380 
End bp221135 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content71% 
IMG OID644990526 
ProductMIP family channel protein 
Protein accessionYP_003148072 
Protein GI256824112 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 
TIGRFAM ID[TIGR00861] MIP family channel proteins 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value0.967608 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAAGC GCCTGGCCGC CGAGGCCCTG GGCACCTTCT GGCTGGTCTT CGGCGGCTGC 
GGCTCGGCGA TCTTCGCCGC CGCCAGCATG GGGGAGGCTG CTGGCGAGCC CATCCACGTC
GGCATCGGCT ACCTGGGCGT CGCCCTGGCC TTCGGGCTCA CCGTGGTCAC CATGGCCTAC
GCCGTCGGTC ATGTCTCCGG CGGGCACTTC AACCCGGCCG TGACGGTCGG CCTGGCCACC
GCTGGCCGCC ACCCGTGGAA GGACGTGCTG CCCTACGTCG TCGTCCAGGT CATCGCCGGT
CTGGTGGCTG GTGGTGCGCT CTACGCCATC GCCACCGGCA AGGCCGGCTT CGAGGCGGTC
GGCAGCATGG CGGCCAACGG CTACGGCGCG AACTCGCCCG AGGGCTACTC GATGATGGCC
GTCCTGCTGG CGGAGGTGAT CCTCACGGCG TTCTTCCTGT ACGTGATCCT CGGCGCCACC
GACGACCGCG CCCCCCAGGG CTTCGGCCCC CTGGCCATCG GCCTGGCGCT CACGCTGATC
CACCTGATCT CCATCCCGGT GTCGAACACC TCGGTGAACC CCGCCCGGTC CACCGGCGTG
GCCTTCTTCC ACGGCGACGG TGCCCCGGCC CAGCTTTGGC TCTTCTGGCT GGCGCCCGTC
CTCGGCGCGG TCATCGCCGG CATCAGCTAC CACGCACTGC TGGGCGAGGA GAAGCGTTCG
GCCATCCGCG AGGCCGCCGC TCACGACGCC GCCTGA
 
Protein sequence
MPKRLAAEAL GTFWLVFGGC GSAIFAAASM GEAAGEPIHV GIGYLGVALA FGLTVVTMAY 
AVGHVSGGHF NPAVTVGLAT AGRHPWKDVL PYVVVQVIAG LVAGGALYAI ATGKAGFEAV
GSMAANGYGA NSPEGYSMMA VLLAEVILTA FFLYVILGAT DDRAPQGFGP LAIGLALTLI
HLISIPVSNT SVNPARSTGV AFFHGDGAPA QLWLFWLAPV LGAVIAGISY HALLGEEKRS
AIREAAAHDA A