Gene Ksed_01910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_01910 
Symbol 
ID8371703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp192919 
End bp194280 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content73% 
IMG OID644990498 
Product3-hydroxyacyl-CoA dehydrogenase 
Protein accessionYP_003148044 
Protein GI256824084 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value0.960421 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.776802 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCGA CCGAACAGAC CGGCACCCCC CAGGCCCACA CCGACCCGTC AGGTTCCCAG 
GACGCCCCGC GGTACGCCGT CGCGGTGATC GGTGCCGGGT CGATGGGGGC CGGCATCGCC
CAGGTGGCCG CCCAGGCGGG ACACGAGGTG CACCTGGTGG ACGTGCGGGA CGGTGCTGCG
GCGCAGGCCG TCGAGAAGCT CGGCGCGACG CTGCGCAAGC TCGCCGGGAA GGGCAAGATC
TCCGAGGCCG ACGCCGAGGC TGCCATCGGG CGACTGGTCG TGGGGCCGGC CGCCAACGGG
GACCTGGCAG CCCTGCCGGC GATGGGCCTG GTGATCGAGG CCGCCGTCGA GCGCCTCGAC
GTGAAGCAGG AGGTCTTCTC CACGCTCGCG GAGCACCAGG GAGCCGACAC GATCCTGGCG
AGCAACACCT CGAGCCTGGA CATCGCCGCC ATCGCCGAGG GGGTGGCCGA GCCGGGGCGC
GTCATCGGCC TGCACTTCTT CAACCCGCCG CCGCTCATGA AGCTGGTGGA GGTCATCCGG
GGTGAGCAGT CCTCCCTCCA GGTGCTGGAC GCCGCGACCG AGCTGATGCG CTCCTGGGGC
AAGACGCCGG TGCGCTGCAC GTCCACGCCG GGCTTCATCG TGAACCGGGT GGCCCGGCCG
TTCTACGGCG AGGCGCAGCG GATGGCGCAG CGGGGCAGCG CGTCCCCGGC GGACCTCGAC
CTCGCACTGA CCGAGTACGG CGGCTTCGCG ATGGGGCCGT TCCGGTTGAC CGACCTCATT
GGGCAGGACG TGAACTACGC CGTCGGCCAC AGCGTGTGGC AGCAGACCGA CCAGGACCCG
CGCTACGAGC CAACCGGTTT CCAGGACGAC CTCGTGCAGG CCGGCGCCCT GGGCCGCAAG
ACGGGCCGCG GCGTCTACAC CTACGACGAC CAGGGGAAGC CGACCGATGC CGAGGGCGAC
CCCTTCGCGG CACGGGCGCT GGCCCGGGGG CCGGTCGAGA CGAACGTGGT GGCCCGCACC
ATCGCGATGC TGGTGAATGA GGCGGTCGAC CTGGTGCACC GCGGGGAGGC GTCGCGCCGG
GACGTGGACA CCGCGATGAA GCTGGGCACG AACTATCCCA AGGGGCCGTT CGAGTGGCTC
GAGGAGCTCG GCGCCGAGAA GGTGCTGGCC GACCTGCGGG TCATGGACGC GGCGTACCCG
ACCGGGCGGT ACCGGCCGAG TGAGGCGCTC GTGGCGATGG TCGACGCCTC AGAGCGCGGG
GCCGGGGATC GCGAGACGGG GGGCCCGGCG GCCGCGGGAC GCGGGGCCGG GGATCGCGAG
ACCGGGGGAC ACCACACCGA CGAGGAGAGA GAGCGCGCAT GA
 
Protein sequence
MSSTEQTGTP QAHTDPSGSQ DAPRYAVAVI GAGSMGAGIA QVAAQAGHEV HLVDVRDGAA 
AQAVEKLGAT LRKLAGKGKI SEADAEAAIG RLVVGPAANG DLAALPAMGL VIEAAVERLD
VKQEVFSTLA EHQGADTILA SNTSSLDIAA IAEGVAEPGR VIGLHFFNPP PLMKLVEVIR
GEQSSLQVLD AATELMRSWG KTPVRCTSTP GFIVNRVARP FYGEAQRMAQ RGSASPADLD
LALTEYGGFA MGPFRLTDLI GQDVNYAVGH SVWQQTDQDP RYEPTGFQDD LVQAGALGRK
TGRGVYTYDD QGKPTDAEGD PFAARALARG PVETNVVART IAMLVNEAVD LVHRGEASRR
DVDTAMKLGT NYPKGPFEWL EELGAEKVLA DLRVMDAAYP TGRYRPSEAL VAMVDASERG
AGDRETGGPA AAGRGAGDRE TGGHHTDEER ERA