Gene Ksed_00420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_00420 
Symbol 
ID8371555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp44512 
End bp45981 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content73% 
IMG OID644990358 
Productgamma-aminobutyrate permease-like transporter 
Protein accessionYP_003147904 
Protein GI256823944 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value0.736839 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.251816 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCACAG CACCATCCAC CCCCGCCGCC GACGCGAGCG CCGCCGAGTC CCCGGACTCC 
CCGCTGGCCC GCGGGCTGAG CACCCGGCAC ATCCGCTTCA TCGCCCTGGG CACGGCGATC
GGCACCGGCC TGTTCCTCGG CTCCGCGAGC GCCATCCAGC TCGCCGGGCC GGCCGTCCTG
CTGGCCTACC TGGCCGCGGG GGCCGCCATC TACGTGGTGA TGCGCGCGAT GGCCGAGATG
GTGCTGCGCA CCCCGGACGC CTCCTCGTTC GTGGACTTCA CCCAGCGCTA CCTCGGCCGC
ACCTGGGGGT TCGTGATCGG CTGGATCTTC ACCGCCGAGA TGCTGCTGGT CGGCATCGCC
GACGTCACCG CGCTGCGCAT CTACCTGGGC TCGTGGTGGC CCGCGGTGCC GGGGTGGGCG
TGGATGGTGG GCACCATCGC CCTGGTGCTG GGGCTCAACC TCGTGGCCGT CCGGCTGTTC
GGGGAGACCG AGTTCTGGCT CACCCTGCTG AAGGTCGGCG CCATCGTCGC GATGGTGGTG
CTCGGGGTGG GCCTGCTGGT CACCGGCGCG GGCCTGCCCA CCGGCCAGCC GAGCGTCGCC
CACCTGTGGG AGCACGGCGG GTTCGCCCCG CACGGCGCCT GGGGCATCCT GCTGTCGCTG
ACGGTCGTGG TCTTCGCCTT CGGCGGCATC GAGACCGTCG GCCTCACGGC GGCCGAGTCG
CAGAACCCCC ACCGCAGCAT CCCCGACGCC ATCAACACCG TCCCGTGGCG GATCCTGCTG
TTCTACGTGG GCTCGGTGGG CGTCATGCTC ACCCTCGCCC CGTGGACGGG CATCACCGGG
GAGCAGTCGC CCTTCGTCCA GATCATCGAT GCGGTGGGCC TCCCCGCCGC CGCCCACGTC
CTGAACGCCG TAGTCATCAT CGCGGCCTTC TCGGCGCTGA ACGCCATCAC CTTCGCCATC
GGGCGCACGC TGTTCGGCCT GGCCGCGGCC GGGCACGCCC CGGCGGTCTT CGGGCGGGTC
TCGGGGCGCG GAATCCCGGG GGCGGCGATC GTCACCGTGG GCGTGGCCCT GGTGATCGGG
CTGGTCCTCA ACCTGGTGGT GCCGGACCGG GTGTTCACCT TCGTGGCCTC CCTCGCGAGC
TTCGCGACCG TGTTCGTGTG GCTGCTGATC CTCGCAGCCC ACCACGGGCT GCGGCGGCGC
ATCGCCCGCG GCGCCCTGCG GCCCGGGGCG TTCGCCACGC CCGGCTGGCC CTGGGTGACC
GCGCTCGCGG CCGCCTTCCT GGTGCTCGTG CTGGTGATGA TGGCCTTCCT CCCCGAGGGC
CGTGCCGCCC TGGCGGTGGG CGTGGTCACG ACGGCGCTCC TGGCGGGGCT GGGGCACCTC
TCGGCACACC GCCCGGACGG CTCGTCGGAG GGCCCGCCGG AGGGCGGCAG GTCAAGAAAG
GGTCACGATC ACCCCGAGCC CGTGTCGTGA
 
Protein sequence
MSTAPSTPAA DASAAESPDS PLARGLSTRH IRFIALGTAI GTGLFLGSAS AIQLAGPAVL 
LAYLAAGAAI YVVMRAMAEM VLRTPDASSF VDFTQRYLGR TWGFVIGWIF TAEMLLVGIA
DVTALRIYLG SWWPAVPGWA WMVGTIALVL GLNLVAVRLF GETEFWLTLL KVGAIVAMVV
LGVGLLVTGA GLPTGQPSVA HLWEHGGFAP HGAWGILLSL TVVVFAFGGI ETVGLTAAES
QNPHRSIPDA INTVPWRILL FYVGSVGVML TLAPWTGITG EQSPFVQIID AVGLPAAAHV
LNAVVIIAAF SALNAITFAI GRTLFGLAAA GHAPAVFGRV SGRGIPGAAI VTVGVALVIG
LVLNLVVPDR VFTFVASLAS FATVFVWLLI LAAHHGLRRR IARGALRPGA FATPGWPWVT
ALAAAFLVLV LVMMAFLPEG RAALAVGVVT TALLAGLGHL SAHRPDGSSE GPPEGGRSRK
GHDHPEPVS