Gene Shel_27940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_27940 
Symbol 
ID8396682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp3093669 
End bp3094235 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content61% 
IMG OID644987533 
Producthypothetical integral membrane protein (Trep_Strep) 
Protein accessionYP_003145136 
Protein GI257065464 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00225976 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACGT GGAATTCCAA AAGCGCGTTG CGGGTGCTCC TGTGCGCGGT GCTGTATGCC 
GCTTTGAGCG CGGTCGTGTG CTTCACGGGC GCCGTCCACC CGATTTTCTT CGTGGGATAC
CAGATCACGG CAGGCATCCT GCTTTCGGGT ATTGCGATCT GGGCGTTTCG CAACGTGCAG
GCGCCGGGCG TCGCAGCCTG CCTTGCTTTG GCCATGATCC TGCTGCTGGT GGCCATCGGC
GATGCCGTCA TGTGGCACGT GGTGCCTCTT GTGGTGATCG GCTTGCTGGC GGAAGCGGTC
CGCGCCGTCA GGAAATACGA CTGGCTGGGA GACGTGATCG CCACGGCCGT CATGACGTTC
TCGACGTTCG GATACTACGG CCAAATCTGG TTCAACCGGG CATACACCTA CGAATGCGCC
ATCGAGGAAA TGCCGGCCGG ATATGCCGAC GGACTTATGG CGGCAAGCCC CGCATGGTCG
TTGCCGCTGG TCATCGTGAT CGGCATCGTG GTGTCCGTTG CGGTCGCATA TCTTACGGCG
AAGCTGTTCA AGTTGGAGAA GCGCTAG
 
Protein sequence
MNTWNSKSAL RVLLCAVLYA ALSAVVCFTG AVHPIFFVGY QITAGILLSG IAIWAFRNVQ 
APGVAACLAL AMILLLVAIG DAVMWHVVPL VVIGLLAEAV RAVRKYDWLG DVIATAVMTF
STFGYYGQIW FNRAYTYECA IEEMPAGYAD GLMAASPAWS LPLVIVIGIV VSVAVAYLTA
KLFKLEKR