| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_26990 |
|---|
| Symbol | |
|---|
| ID | 8396587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 2981084 |
|---|
| End bp | 2982739 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644987441 |
|---|
| Product | succinate dehydrogenase/fumarate reductase flavoprotein subunit |
|---|
| Protein accession | YP_003145047 |
|---|
| Protein GI | 257065375 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGA CGTACAAAGG CATGGACCGC CGCTCGTTTC TGAAGGGAGC TGCTCTGTTT
GGCGGAGCCG CCGCAGCGAT GGGCATGGCC AGCTGCGCTC CCAGTGCAGC CGGCGAAGGC
GGCTCGAGCA GCTCGGACGG CGCAGGCGAC AACGTCACCT GGGACGAGGA ATACGACTTC
GTGGTCGTCG GCGGCGGCAA CGGCGCGTAT GCAGCCATTC TTGCCGCGCA GGCCGGCTAC
AAAACCGTGC TGGTGGAGAA GGGCGCCAGC TACGGTGGAA CCACCGCGTT CTCCCACAAC
GGCATGTGGG TCCCCAACAA CTGGTTCATG GCCGACGAGG TCGCGAACTG GCCGCAGATC
GTTCCCGACA CCGATGCCGA CATCCCCGAG ATCGTCGATT ACGCGCTTTC CTGCGACACG
TCGGGCGCCG CGGACCGCGA GCTGGTGACC GACTACGTGA CCAACTTCGC CCCTGCCCTC
AAGAAGTTCG GCGAGATGCT GAACATCGAG TTCGCCATGG GCCTCATCGA CGACTACTAC
GGACTGCCCG GCGCCAAATT CGGCCGCCAG GTGAACTTCG CCAAAGACGG CGAAGCCACC
GGCCCCGGCA CGTTCTCCAG CATCATCGAG CCGCTGGTCA AGGAGCACAA CGTGGAGGTG
CGCACGAACA CCCCTGCCAC CAGGCTGTAC CGCGACTCCG AAGGCCGCGT AGTGGGCGTG
CAGGTGGAAG GCGCGTCCGG CACCGTGAAC ATCAAGGCGA ACAAGGGCGT GCTGCTGAAC
ACCGGCGGCT TCGACCACAA CGAGAAGATG GTCCACGACT ACCTGCGCGG CCCCATCATG
GCATCCAACG CCGTTGAAAC CAACACGGGC GACGGCCACC GCATGGCCGT CGATGTGGGC
GCCGACCTGG GCAACATGTC CTCCGTCTGG GGCGTTCCCT TCTACATCAC CGCCGACGAC
GCACCGCTGA CCGGCAACAT CGTCGACTGG ATGGTGTGGC GCTACGGCGA CCATTCGATC
ATCGTGAACA AGCACGGCAA GCGCTTCGGC GACGAGACCG CGTCCTACAC CGCCGCCAAC
CTTGCCTACT ACCAGTACAG CACGCAGTAC TTCGGGCTCG AGAACGTGCC CGCGTTCCAC
ATCGGCGACC AGAGCTTCGT GAACATGTAC GGCTACCCCA CCGTCACGGA TGCCGCAGCC
GAGCTGCCTG AATACATCAA GCAGTACGAT TCCCTCGAGG AACTGGCCGC TGATCAGGGC
ATCGACGCTG ACGCTTTGGT GGCTCAGGTG GAGCGCTGGA ACGAGATGTG CGACAAGGGC
GCCGACGAGG ATTTCGGCCG CCCGTCCAGC CAGTGGCCGA AGGGCCCCTT CTTCGTGCAC
GAGGACGAGA CCTGCATGGG CAAAATCGAG CAGGCGCCGT TCTTCTGCGT GAAAATCGGC
CCCGGCACCT GCGGTACCAA CGGCGGCATG CGCGTGAATG CCGACGCCCA GGTTCTGGAC
CGCGACGGCG AGGTCATCGA AGGCCTGTAC GCCGCCGGCA ACTGCTCGTG CGCGTTCTTC
GGCAACGCCT ACCCCGGCCC CGGCTCCACC GTCGGATCGG CCGTGTACCG CAACATCCGC
GCTGCCAACC ATGCGCTTGA TCTGGGAATC ATCTAG
|
|---|
| Protein sequence | MTTTYKGMDR RSFLKGAALF GGAAAAMGMA SCAPSAAGEG GSSSSDGAGD NVTWDEEYDF
VVVGGGNGAY AAILAAQAGY KTVLVEKGAS YGGTTAFSHN GMWVPNNWFM ADEVANWPQI
VPDTDADIPE IVDYALSCDT SGAADRELVT DYVTNFAPAL KKFGEMLNIE FAMGLIDDYY
GLPGAKFGRQ VNFAKDGEAT GPGTFSSIIE PLVKEHNVEV RTNTPATRLY RDSEGRVVGV
QVEGASGTVN IKANKGVLLN TGGFDHNEKM VHDYLRGPIM ASNAVETNTG DGHRMAVDVG
ADLGNMSSVW GVPFYITADD APLTGNIVDW MVWRYGDHSI IVNKHGKRFG DETASYTAAN
LAYYQYSTQY FGLENVPAFH IGDQSFVNMY GYPTVTDAAA ELPEYIKQYD SLEELAADQG
IDADALVAQV ERWNEMCDKG ADEDFGRPSS QWPKGPFFVH EDETCMGKIE QAPFFCVKIG
PGTCGTNGGM RVNADAQVLD RDGEVIEGLY AAGNCSCAFF GNAYPGPGST VGSAVYRNIR
AANHALDLGI I
|
|---|
| |