Gene Shel_25850 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_25850 
Symbol 
ID8396473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2857484 
End bp2858137 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content59% 
IMG OID644987328 
Productpredicted cobalamin binding protein 
Protein accessionYP_003144939 
Protein GI257065267 
COG category[R] General function prediction only 
COG ID[COG5012] Predicted cobalamin binding protein 
TIGRFAM ID[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGTA AGGAAGAACT CATTCAGCGG ATGTACGACT GCGTCGTCGA GATGGAGGAC 
GAAGACGTCG TGAACGCATG CAGGGAATAC CTTGCAGAAG GCTACGACGC CTACGACGGC
ATCATGGAAG GCCTCGTGGC CGGTATGAAC AAAGCCAGCG AGCTTTACGA CGAGGAGGAA
TACTTCGTAA CCGACGTGCT GCTCTGCTCG GATGCGCTGT ATGCAGGCTT GGACGTGCTG
CGTCCGCACC TCAAGAACGA CGAGTCGATG GGCGAAGCCA AAAAGGTCGT TATCGGTGTC
GTTGAGGGCG ATACGCACGA CATCGGAAAG AACCTCGTGA AAATCATGCT TGAAACCGCC
GGCTTCGAGA TGTACGACCT TGGCCGCGAC GTGCCCCTGA ACTCCTATGT CGAGAAGGCC
CAGGAGGTCA ATGCGGATAT CGTCGCCATG TCCACGCTCA TGACCACCAC CATGGGCGGC
ATGCGCACCG TCGTTGAAAA GCTCGGCGAA GCCGGCATCC GCGATCATGT GAAGGTGATG
ATCGGGGGCA GCCCCGTTTC CCGCAAGTTC GCCGATGAGA TTGGCGCCGA CGGCTACTCG
TCGAACGCCG TTGAAGCCGT GGCCGTCGCC AAGGAGCTCG TCGGCATGAA GTAG
 
Protein sequence
MASKEELIQR MYDCVVEMED EDVVNACREY LAEGYDAYDG IMEGLVAGMN KASELYDEEE 
YFVTDVLLCS DALYAGLDVL RPHLKNDESM GEAKKVVIGV VEGDTHDIGK NLVKIMLETA
GFEMYDLGRD VPLNSYVEKA QEVNADIVAM STLMTTTMGG MRTVVEKLGE AGIRDHVKVM
IGGSPVSRKF ADEIGADGYS SNAVEAVAVA KELVGMK