| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_25390 |
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| Symbol | |
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| ID | 8396427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2811623 |
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| End bp | 2813167 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644987284 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003144895 |
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| Protein GI | 257065223 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.229483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.345378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAG ACGAATTTAA GAATCCGGTA TTTCTTATTT CTCTGATTCT TTGTGCGATT
ATGGCTGTGT GTGCCATTGC CCTCAACCCG CAATTCACCG CAGTTTCCAA TGCAGTGTTC
AGCTTCCTCA CCGTCGACTT TGGATGGCTG TACCTGATTG CCATGCTCTC CTTCGTTATC
TTCGTCATCG CGATTGCATG CACGAAGTGG GGCAAGATTA AGCTTGGTCC GGATGACTCC
GAGCCTGAGT ACTCCACCAC GTCCTGGTTC GCAATGCTGT TCGGCTGCGG CATGGGCGTC
GGCCTGGTGT TCTGGGGCAT CGCTGAGCCC ATCAGCCACT ATGCTGGCCC CATGGCCGGT
ATCGAGCCCA TGACTCCGGA AGCCGCCAAC TTCGCAATGA GCGCTTCGTT CATGCACTGG
GGCATCCATC CTTGGGCTAA CTACGCTGTT ATCGGCCTGG CTCTTGCTTA CTTCATGTTC
CGCAAGGGCA AGACCGCTCT GATCAGCAAC GCTCTTCTGC CTGTTCTGGG CGAGAAGAAC
GCCAAGGGCT GGCTGGGCAA GCTCATCGAC ATCCTGGCCG TTTTCGCTAC CATGGCTGGC
GTCGTCACCT CTCTGGGTCT CGGCGTTCTC CAAATCAACG CTGGTCTGAA CTACATGTTC
GGTGTTCCGA GCAACCTGGT CGTTCAGATC ATCATCATCC TCGTGATTTC CGTCATCTTC
ATCGGCTCCG CAGTTCTCGG TATTGAGAAG GGCATCTCCA AGGTCTCCGA CCTCAACCTG
ATCATCGCCG TCTGCGTGCT GATTGTGTGC TTCCTCGTTG GCCCGAAGAT CGACATCCTC
AACAACCTCA TCGGTGGTCT GGGCGACTAT GTCAACACCT TCTTCCAGAG CTCTCTCGGC
CTGACCGGTT ACGGCGATAA CAGCTGGACG CTCGGCTGGC GCATCTTCTA CTGGGCTTGG
TGGATTGCTT GGGCACCCTT CGTCGGCGTG TTCATCGCCC GTATTTCCAA GGGCCGCACC
GTCCGTGAAT TCATCATCGG CGTTGTGTTC ATCCCGGCTA TCGGTTCCAT CCTCTGGTTC
GCAGTGTTCG GTTCTCTGGG CCTGACCCTC GCCAACACCG GCGCCATCGA CGCCGAGACC
GTTGCTGCCA TCGCTGCTTC GCCTGAGACC GGCCTGTTCC TGGTCCTCGG CAAGTACCCG
CTGGGCATGA TCATCTCCAT CGTCATCCTG GTTCTGATCT GCACCTTCTT CATCACGTCC
GCCAACTCTG GCACGTTCGT TCTGGGCATG CTGTCCTCCA ACGGCAACAT GAACCCGCCC
AACAGCAAGA AGATCCTGTG GGGCATCGTG ATGACTGCTA TGGCTATCGG TCTTCTGATG
GCCGGCGGCC TGAAGCCGCT GCAGACCATC TCCATTGCCG CAGCATTCCC GTTCATCTTC
ATCATGATTG CTGCTATGGC ATCTGTGGTC AAGGGTCTGT CTCACGACGC GGATACGCCC
AACGTTGGCG ATCCGGACTT CGTCCCCGAG CAGATCGAGG GCTAA
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| Protein sequence | MNKDEFKNPV FLISLILCAI MAVCAIALNP QFTAVSNAVF SFLTVDFGWL YLIAMLSFVI
FVIAIACTKW GKIKLGPDDS EPEYSTTSWF AMLFGCGMGV GLVFWGIAEP ISHYAGPMAG
IEPMTPEAAN FAMSASFMHW GIHPWANYAV IGLALAYFMF RKGKTALISN ALLPVLGEKN
AKGWLGKLID ILAVFATMAG VVTSLGLGVL QINAGLNYMF GVPSNLVVQI IIILVISVIF
IGSAVLGIEK GISKVSDLNL IIAVCVLIVC FLVGPKIDIL NNLIGGLGDY VNTFFQSSLG
LTGYGDNSWT LGWRIFYWAW WIAWAPFVGV FIARISKGRT VREFIIGVVF IPAIGSILWF
AVFGSLGLTL ANTGAIDAET VAAIAASPET GLFLVLGKYP LGMIISIVIL VLICTFFITS
ANSGTFVLGM LSSNGNMNPP NSKKILWGIV MTAMAIGLLM AGGLKPLQTI SIAAAFPFIF
IMIAAMASVV KGLSHDADTP NVGDPDFVPE QIEG
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