Gene Shel_25310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_25310 
Symbol 
ID8396419 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2803521 
End bp2804954 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content63% 
IMG OID644987276 
Productseryl-tRNA(Sec) selenium transferase 
Protein accessionYP_003144887 
Protein GI257065215 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] 
TIGRFAM ID[TIGR00474] seryl-tRNA(sec) selenium transferase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.362155 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGT CTGTCAATAC GAAGCTGTTC AGGCAGCTTC CCCAAGTCGA AGAAGTGCTG 
CATGACAAGG CGCTGACCTC TATCACCGAT GTTCCGCGCG ACATCGCCAC CAGTGCCGTT
CGGGCTGAAG TCGATGCACG GCGCCAAGAG ATACTGAACG GCGGAACGCC CGAGCTCAGC
CTGGCCGACA TCGCGGCTGC AGCCGCCAAG CGCGTGCAGC TCCTCACGGC TCCGTCCCTG
CGTCGGGTCG TGAACGCGTC TGGTGTCATC ATCCATACGA ACCTCGGTCG AAGCGTGCTT
GCCGAAGAGG CCGTCGCGGC CGTCAACGAG GTCATCGTGG GGTATTCGAC CCTCGAGTAC
GACCGCAAGA CCATGGCCCG CGGCAGTCGC CACGACCATT GCGAGTCGCT CATCTGCACG
CTGACCGGCG CCGAGGCGGG CATCGCCGTC AACAACAACG CCGCCGCCGT CATGATGGTG
CTCTCCACCT TCGCAGCCGG CCACGAGGCT ATCGTCTCCC GCGGCGAACA GGTCGAAATC
GGCGGCTCCT TCCGCATTCC CGAGATCATG CAGCAGTCCC ATGCGCACAT GATCGAGGTG
GGCGCCACCA ACAAGACCCA TCTGAGCGAC TACGAGCGCG CATTGACCGA CGACACGGCC
ATGATGCTCA AAGTCCATCC TTCCAACTAC CGCATGACGG GCTTCACCGA GTCGGTGTCC
ATCCACGACC TGCACAACCT GGCGGTCGAG CATGAAAAGG CCACCGGCAA GAAGGTGCTC
GTCTACGAGG ACCAGGGTTC GGGCGCGTTT TTGAGGCTGG CCGCCTTCGG CAAGTACGCC
GAACCCGCCG TGGCCGAATC CCTGGCCGCC GGCGCCGACA TCGTTTCGTT CTCGGGCGAC
AAGCTGCTGG GCGGACCCCA GGCGGGCATC ATCGTGGGTC GTGCCGACCT CATCGAGAAG
TTGAAGAAGA GCCCGCTCGC CCGTGCCCTT CGCCTTGACA AGATGACCCT TGCCGCGTTG
GAGGCCACGC TGCGCATCTA TCTGCATCCC GAGAAAGCGA TGACCCGCAT TCCGACGGTG
CGCATGCTGG TCGAAAGCCC CGAAGAGGTC CGCGAGCGCG CATGCGCCCT GCGCGACATC
GTGGCCAAGA ACATCGACCC CGACTTGGTC GACCTTGAAA TCGTCGAGGA AACGTCCCGT
GCAGGCGGCG GTGCCTTGCC GATGTGCGAC ATCCCCACTT ATGCGATGCG GATGCGCTTC
CGCAAGGGCA ACGCTCAGGA TTGCGAGAGG TATCTCATCC AGGAATCCCC GGTTATCGTT
GTGGCCCGCA TTCACGATGA GGCCATCCTC TTCGACGCGC GCACCATTCT CAGCGAGGAG
GAGATGAAGG CCATCGCGTT GGGCATCGCC TTGTATTTCG ATAAGATCAA ATAA
 
Protein sequence
MSPSVNTKLF RQLPQVEEVL HDKALTSITD VPRDIATSAV RAEVDARRQE ILNGGTPELS 
LADIAAAAAK RVQLLTAPSL RRVVNASGVI IHTNLGRSVL AEEAVAAVNE VIVGYSTLEY
DRKTMARGSR HDHCESLICT LTGAEAGIAV NNNAAAVMMV LSTFAAGHEA IVSRGEQVEI
GGSFRIPEIM QQSHAHMIEV GATNKTHLSD YERALTDDTA MMLKVHPSNY RMTGFTESVS
IHDLHNLAVE HEKATGKKVL VYEDQGSGAF LRLAAFGKYA EPAVAESLAA GADIVSFSGD
KLLGGPQAGI IVGRADLIEK LKKSPLARAL RLDKMTLAAL EATLRIYLHP EKAMTRIPTV
RMLVESPEEV RERACALRDI VAKNIDPDLV DLEIVEETSR AGGGALPMCD IPTYAMRMRF
RKGNAQDCER YLIQESPVIV VARIHDEAIL FDARTILSEE EMKAIALGIA LYFDKIK