Gene Shel_24550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_24550 
Symbol 
ID8396343 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2720090 
End bp2722534 
Gene Length2445 bp 
Protein Length814 aa 
Translation table11 
GC content64% 
IMG OID644987201 
Productanaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 
Protein accessionYP_003144812 
Protein GI257065140 
COG category[C] Energy production and conversion 
COG ID[COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing 
TIGRFAM ID[TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACG AAAAAGACAC CGCCATGTCG CGGAGGACCT TCGTTAAGGG AGGAACCCTC 
GCAGGGCTCG CTTTCGCAGG CAGCTCCGCA CTGTTCGCTT GCTCTCCCAG CGCGAGCGAA
CCGGCACAGG ACGAGGCCGA AACCGGCGAA GCGCCCGTCG AAGGTGCCGA GGAGACGGTC
ACCTGGTCCC ACTGCCACGT CAATTGCGGC GGCGCTTGCC CGCTGCGCCT GCATGTGGTC
GACGACGAGA TCGCCTGGGT CGACAATGAC ACCAGCGGCA GCCCCGAGTT CGGCGCCTAC
CAGCTGCGCC CCTGCCTGCG CGGCCGCTCC ATCCGTCGTT GGATCAACGG CGAGGACCGT
CTGAACTACC CCATGAAGCG CGTCGAGGGC ACCGCCCGCG GCGAGGGCAA GTACGAGCAG
ATCAGCTGGG ACGAGGCTCT GGACATCATC GCCAGCGAAT TCACCCGCGT GAAGGAAACC
TACGGCAACG AGGCCATCTT CATCCAGGAG TGCTCCGGCG TCGAGCAGAA CGTCATGATG
AACAGCCCGT TCTTCCGTCT GTTCAACCTG TTGGGCGGCG AAACCAAACG TTACGGCAAC
TACTCCAACG CCGGCATCAG CTTCGGCGCT TTGCCTTACA CCTACGGCGG CGGCTGGGCG
GCACGTCCGT TCCACTCCAT CGCCGACGGC GAGCTGGTGG TCATGTTCGG CAACGCCCCT
GCAGACACCC GCATGGCGGG CGACGGCGCA GGCTACGACC TGAACGTCAT GCGCGAGCAG
AAGGGTGCGA AGATCATCGT CATCGACCCG CGCCGTTCCG ACATCGCCGC CAATCAGGAT
GTCGAATGGA TTCCGATCAT GCCCGGCACC GATGCCGCGC TGGTCGCAGG CGTCGCCCAT
GAGCTGATCG CCGCCGACCT TGTCGACCTG GACTTCCTGC ACACCTACTG CGTGGGCTAC
GACGAGGAGA CGCTGCCCGA AGGCGCCCCT GAGAACAGCT CCTACTACGC CTACATCATG
GGCACCGGCT ACGACATGGT GGAGAAAACC CCTGCTTGGG CCGCCGCCAT CACGAAGGTT
CCCGAGGCCC GCATCATCGA GCTGGCTCAC CAGATCGGCG AGGCCAAGCC CTGCTTCATC
TGCCAGGGTT GGGGCCCGCA GCGCCGCACC AACGGCGACT CCGCATCCCG CGCCATCATG
CTGCTGCCCC AGCTGGTCGG CCAGGTGGGC AAGCCCAACA CCAACAGCGG CGCCCGCGAA
GGCAACGGTG GCTTCTGGAT CGACACCTTC CCCGAGAGAG ACAACCCCGT ATCCGCCCGC
TTCCCCAACT TCCTGTGGCC CGAAGCCATC GACCACGGTC ACGAGATGAC CGCCACCAAC
GCCGGCATCA TCGACGGCGA CGGCCTGAAG AGCGACATCA AGTTCCTGGT CAACTACGGC
AACAACATGA TGGCCAACCA GAACGCCGAT ATCAACACCA CCACCGACAT CCTGAAGGAC
GAAAGCAAGT GCGAGTTCAT CCTGCAGTAC GACGTGGTGT GGAGTGATTC GTGCAACTGG
GCCGACATCG TGCTGCCCGA CCTGACCCCG CAGGAAACCT GGACCTGGTC CGTGCAGGGC
GAATGCAACG ATTCCCTGGG CGTGTGGTTC GGCCGTCCTT CCACCAGCCA GAAGTTCGAG
CGTCGCGAGG TATACGAAGT CTGCGCCGAC CTGGCCGAGC GTCTGGGCGT CTACGACGAG
TTCACCGACG GCGGCAAGAC CCGCGAGGAC TGGTGCCGCG AGCTGTACGA AGCCTGGGCC
GCCGACAACC CGAACGCCCC GCAGACCTTT GACGAGGGCC TGGAAATGGG CATCTACAAG
GAAGAGATCG AATGGTCCGA CGGCGGCACC GATCCCTTCA TCGAGGACCC CGAAGCGAAC
CCCCTGGAAA CGGCCACCGG CAAGATCCAG GTGTACTCCC CCGAACTGGC GGAAATGGCC
GAAACCTGGG AACTTGAAGA GGGCGAGTCC ATCTGCCCGA TTCCCGCATA CCTGCCCGGA
TTCGAGAACG CCGAAGGCGT GACCGACGAG TTCCCGCTGT GCATGGTAGG CTACCACACC
AAGGCGCACA CGCATTCCAG CTACGCGAAC AACATGATCA TCCAGGACGC CCATCATCAC
AACGCCTGGA TCAACCCGAT CGACGCCGAA GCCCGCGGCA TTGCCAACGG CGACGCGGTG
CGCGTCAAGA GCGCCCATGG CGAGATCGAG ATCGAGGCCC GCGTGACGAA CCGCATCATC
CCTGGCTGCG TGGCCATTCC GCAGGGCATG TGGCATAAGG CCGACATGCA GGGCGACCGC
ATCGACTTCG GCGGCTGCAT CAACACGCTT GCCAGCCGTC GCGCAACGCC GGTCGGCAAG
GCAGTTGGCG CACACAGCGC CGTCATCGAA GTCACGAAGG CGTAA
 
Protein sequence
MTNEKDTAMS RRTFVKGGTL AGLAFAGSSA LFACSPSASE PAQDEAETGE APVEGAEETV 
TWSHCHVNCG GACPLRLHVV DDEIAWVDND TSGSPEFGAY QLRPCLRGRS IRRWINGEDR
LNYPMKRVEG TARGEGKYEQ ISWDEALDII ASEFTRVKET YGNEAIFIQE CSGVEQNVMM
NSPFFRLFNL LGGETKRYGN YSNAGISFGA LPYTYGGGWA ARPFHSIADG ELVVMFGNAP
ADTRMAGDGA GYDLNVMREQ KGAKIIVIDP RRSDIAANQD VEWIPIMPGT DAALVAGVAH
ELIAADLVDL DFLHTYCVGY DEETLPEGAP ENSSYYAYIM GTGYDMVEKT PAWAAAITKV
PEARIIELAH QIGEAKPCFI CQGWGPQRRT NGDSASRAIM LLPQLVGQVG KPNTNSGARE
GNGGFWIDTF PERDNPVSAR FPNFLWPEAI DHGHEMTATN AGIIDGDGLK SDIKFLVNYG
NNMMANQNAD INTTTDILKD ESKCEFILQY DVVWSDSCNW ADIVLPDLTP QETWTWSVQG
ECNDSLGVWF GRPSTSQKFE RREVYEVCAD LAERLGVYDE FTDGGKTRED WCRELYEAWA
ADNPNAPQTF DEGLEMGIYK EEIEWSDGGT DPFIEDPEAN PLETATGKIQ VYSPELAEMA
ETWELEEGES ICPIPAYLPG FENAEGVTDE FPLCMVGYHT KAHTHSSYAN NMIIQDAHHH
NAWINPIDAE ARGIANGDAV RVKSAHGEIE IEARVTNRII PGCVAIPQGM WHKADMQGDR
IDFGGCINTL ASRRATPVGK AVGAHSAVIE VTKA