| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_23630 |
|---|
| Symbol | |
|---|
| ID | 8396252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 2616725 |
|---|
| End bp | 2618458 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644987110 |
|---|
| Product | trypsin-like serine protease with C-terminal PDZ domain |
|---|
| Protein accession | YP_003144721 |
|---|
| Protein GI | 257065049 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.31083 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACG AGTTGAACGA CAAGAGCACC CAGAAGGACG CTTCGGGCGT CGACATCACG
CAGGGCGTCG TGTACGGCGG GCTTGACGAG CAATCTGCCG CAGCCGCGTT CGACATGCCC
GCAAATGCGG CAATGGGTCG TAGCACCGAA GAGATGCCTA CCCAATACCC GACGGTGGCG
GCTACCGATT CGATGCCTGC CACGTACCAG GTGGCCGCGC CGGCTTCACC TGGCACCACG
CAGCGCTATG CGTCGACGGC CCAATTCCAG GCTGCGTCCC AGCAGTCTGC GGCAGGGTAT
CAGACCTACC AGCAGACGTA TGCGCAGCAG CAAGCCTTCG CCCAGCAGCA GGCATACGCC
CAGCAACAGG CCCAGCAGGC CCAACAGGCC GCCCAGGCGA AGCAGGCCAA AAAGAACGCG
TCCGGCCAGA AGTCCGGCGC CGGCAAAACC TTCGCTGCCG GATTCGCCGG CGCTGCACTG
GCCTGCGCGT TGGGCCTCGG CGGATTCGTA GGGTACGGTG CGTTGACCAG CAACAACGGA
TCGCAGGGCG ACGTTGCCGA AACCCCCGCC CTGACACAGC CGCAGACCAA GGAATCCTCT
TCCACCACGA TTAACGTGAA CGGCGAAGAC ACCACCTTGG CCCAGGCTGT AGCGGCAAAG
GCCTTGCCCT CCATCGCCAG CATCGACGTG TATACCAAGT CCGGCGGCTC TTCGTGGGGC
TGGGGCATGG AGGCCGACAG CTCCGATTCC AACTCGGCCC TGTCGCTGTA CTCGCTGGGT
TCCGGCGTGG TCATTACCGA GGACGGATAC ATCATCACCA ACTACCACGT GGTTGAAGGC
GCCGACGCGC TGACGGCCAC CATCAACGGC GTTGAATACG ATGCGGAATA CGTCGGCGCA
GACCCGACCA GCGACATCGC TGTCATCAAG GTGAACGCCA CCGACCTGAC GGCCATCGAG
ATAGGCTCGT CTTCCGACGT GCAGGTGGGC GAATGGGTCA TGTCCTTGGG CAATGCGTTC
GGCTTGGACA ACTCCGTTTC CACGGGCATC GTCTCGGCAT TGCAGCGCTC CACGACTTTG
GCTGACGAAA CCACCGGCGA GGTCATGATC TATCCCAACA TGATTCAGAC CGACGCCACC
ATCAACCCGG GCAACTCAGG CGGCGCGCTG GTCAACGCCA ACGGCGAGCT GATCGGCATC
AACTCCATGA TCACGTCCTA TTCGGGCTCC AGCTCGGGCG TGGGCTTCGC CATCCCCATC
GACTACGCCA TGGGTCTGGC CGAACAGATC ATCGCAGGAC AGACGCCGAC CCACGCACAG
CTCGGCGTGT CCATGTCCGC CATTAACGCC GAGGTGGCCC AGTACAACAA CCTGCCCACC
GATAAAGGCG TGTACGTCGC GGCCGTCTAC AGCGGAACCG CAGCTGACGA GGCCGGTCTT
GAAACGGGCG ACATCATCGT CAAGTTCGAC GGCCAGTCGA TAACGGCTCC TGAAGAGCTT
CAGCTGGCTG TTCGCGGCTG CGCTGTTGGC GATACGGTGG ATGTGGTCGT GAACCGTGGC
GGTGAAGAGA TCACCATTTC CGTCACGCTT GGATCAGACG AGACCGCGCT CAGCCAGGAA
GGCGCCCCGC AGAACAATGG AAACGGGTAC GGCAACAACG ACGGCGGTAA CGAATACGGC
TATGGGTACA ACGAACAAGA CCTTTACGAC CTGTTCGAGT ACTTCAATAG GTAA
|
|---|
| Protein sequence | MSDELNDKST QKDASGVDIT QGVVYGGLDE QSAAAAFDMP ANAAMGRSTE EMPTQYPTVA
ATDSMPATYQ VAAPASPGTT QRYASTAQFQ AASQQSAAGY QTYQQTYAQQ QAFAQQQAYA
QQQAQQAQQA AQAKQAKKNA SGQKSGAGKT FAAGFAGAAL ACALGLGGFV GYGALTSNNG
SQGDVAETPA LTQPQTKESS STTINVNGED TTLAQAVAAK ALPSIASIDV YTKSGGSSWG
WGMEADSSDS NSALSLYSLG SGVVITEDGY IITNYHVVEG ADALTATING VEYDAEYVGA
DPTSDIAVIK VNATDLTAIE IGSSSDVQVG EWVMSLGNAF GLDNSVSTGI VSALQRSTTL
ADETTGEVMI YPNMIQTDAT INPGNSGGAL VNANGELIGI NSMITSYSGS SSGVGFAIPI
DYAMGLAEQI IAGQTPTHAQ LGVSMSAINA EVAQYNNLPT DKGVYVAAVY SGTAADEAGL
ETGDIIVKFD GQSITAPEEL QLAVRGCAVG DTVDVVVNRG GEEITISVTL GSDETALSQE
GAPQNNGNGY GNNDGGNEYG YGYNEQDLYD LFEYFNR
|
|---|
| |