Gene Shel_23560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_23560 
Symbol 
ID8396245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand- 
Start bp2609873 
End bp2610928 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content62% 
IMG OID644987103 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_003144714 
Protein GI257065042 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000567148 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0149381 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACCGA ATGAATCAAC CCGCAGGGTA TACGTGGGCG GCGTGCCACT GGGCGGCGGC 
GCCCCGTGCG TGGTGCAGTC CATGCTGAAC GCCCCTGCCA TGGACGTCGA AGCGAACCTC 
GCGCAGATCA ACGCGCTGGC TGAGGCCGGG TGCGAGGTCG TTCGCATGGC CATCCCGAAA 
ACGGAATGCC TGGACGCTTT CGAAGAGGTC TGCCGGAAAA GCCCGTTGCC TGTGGTGGCC 
GACATCCATT TCAACGCGAA CATCGCCATC GAGGCCGCCC GCCGCGGCGC CGCCAAGCTG 
CGCATCAATC CCGGCAACAT CGGCGGGCTG GAGAAGACCG ACGCCGTAAT CGAAGCCGCA 
CGCGAAGCGG GCATTCCCAT CCGCATCGGC GTGAACGCCG GGTCGCTGGA CGACGAGCTT 
GCCGCCCGCG ACGACCTGAC GCTGCCCGAA AAGCTGGCCG CATCCGCCCA GCAGTACGTG 
GAATACTTCC TGAGCAGGGA TTTTCCCGAC ATCGTGGTAT CGGCTAAGGC CCATGACGTC 
ATGACCACGG TGGAAACCTA CCGCATTCTG TCGAAGACCA TCCCTCAGGT GCCGCTGCAC 
ATCGGCATCA CCGAGGCGGG CACGCTCATG CAAGGTGTGG TCAAATCTGC CTGCGGCCTG 
GGCATTCTGC TGGAAGAAGG CATCGGCGAC ACCATGCGCA TCTCGCTGAC TGATGAACCT 
ACCGCCGAAA TCCGTGCGTG CTGGATGCTT CTTTCTGCCC TTGATCTGCG TCGTCGCGGA 
CCGGAAATCA TCAGCTGCCC CACCTGCGGA CGCTGCCAGG TGGACTTGAT CGGCATCGCC 
AAGGATGTGG AGGAGCATCT GCGGACCGTC AAGAAGCCAA TCAAGGTGGC GGTCATGGGA 
TGCGTCGTCA ACGGGCCGGG CGAGGCGCGC GACGCGGACA TCGGCGTGGC GTCGGGCGAC 
GGCGTCGGCG TCGTATTCAA ACAAGGCAAG GTCTTGCGTA AAGTCAAAGA GGGCGATATT 
GTAAACACCC TTATGGAAGA AATCGAAAAC CTGTAA
 
Protein sequence
MKPNESTRRV YVGGVPLGGG APCVVQSMLN APAMDVEANL AQINALAEAG CEVVRMAIPK 
TECLDAFEEV CRKSPLPVVA DIHFNANIAI EAARRGAAKL RINPGNIGGL EKTDAVIEAA 
REAGIPIRIG VNAGSLDDEL AARDDLTLPE KLAASAQQYV EYFLSRDFPD IVVSAKAHDV 
MTTVETYRIL SKTIPQVPLH IGITEAGTLM QGVVKSACGL GILLEEGIGD TMRISLTDEP 
TAEIRACWML LSALDLRRRG PEIISCPTCG RCQVDLIGIA KDVEEHLRTV KKPIKVAVMG 
CVVNGPGEAR DADIGVASGD GVGVVFKQGK VLRKVKEGDI VNTLMEEIEN L