Gene Shel_23260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_23260 
Symbol 
ID8396215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2581247 
End bp2582440 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content64% 
IMG OID644987073 
Productphosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 
Protein accessionYP_003144684 
Protein GI257065012 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase 
TIGRFAM ID[TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000352241 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCGCCA ACAAGACCGT CGTCGTTGCC GTGTGCGGCA GCATCTCGGC GTACAAGGCC 
TGCGACCTGG TGTCACAGCT CGGAAAGCTC AACTGCACGG TTCGGGTCGC CATGACCGAG
GCCGCCTGCA AGATCATCCC CGAGCTGCCG CTTGAAGTCC TTTCGGGGGC GCATGTCGTT
ACGGGCATCT CGCCCGAGGA TTGCGAAACC GTGGATGTCT GGCTGGCTGA AGCCGATGCC
GTTGTGGTGG CCCCCGCCTC GGCGAACACC ATCGCGTACG TGGCCATGGG CGAAGCCCCC
AGCGCCGCGG CGTATGCGGT ACTTAACGCC ACGTGTCCGG TGATGGTGGC CCCCGCCATG
AACGTGAACA TGTACCGAAA CGTCGCCACC CAGGAGAACC TGGAGATGCT ACGCAGCCGC
GGCTACATCG TCATTCCACC CGTCAGCGGG CACTTGGCCT GCGGCGATGA CGGAGAAGGG
AAGCTTCCTT CCATTCCGGA GCTCATCGAT TGGATCTGCC GCGAAATAGC CTGCGAGAAG
GACCTCGCCG GCAAGAGCAT CCTGGTTTCT GCGGGGCCTA CCCGCGAGGC CATCGACCCG
GTGCGCTTCA TCACCAACCA TTCAACGGGC ACCATGGGCT ATGCCATCGC GCGGCGCGCC
ATGCTGCGCG GCGCGGACGT CACGCTGGTG TCGGGTCCTG TCAGTCTGAC GCCGCCGCCT
TTCGTGAACG TGGTCGACAT CACCAGCGCC CAGGACATGT TCGAAGCCGT CAGCTCCCGC
GCCGATGACC AGGACGCCGT CATCATGGCG GCGGCAATCG CCGACTACCG CCCGGCGGAC
GTCAAGGGCG ACAAGATCAA GAAGGCCGAC GGGGCATTCG ACATCGATTT CGAACGCACG
CCGGATACGC TGGCATGGCT CGGAGCGCAC CGCAACGGGC GCACGCTGCT GTGCGGCTTC
TCTATGGAGA CCCGGGACGT GATCGAGAAC TCCCGCGGCA AGCTTCAGCG CAAGAACGTG
GACATGATTG CGGCCAACAG TCTGCGCGAG CCAGGCGCCG GCTTCGGAAC GCCCACCAAC
CACCTCACGT TCATCACAGC CGAAGGCGAA ATCGACCTGC CGCTGCTCTC CAAGGGCGAA
GCGGCCGACC GCCTGCTCGA TGAACTGTTC AAGCTCACTC CGAAAAACGC TTAA
 
Protein sequence
MLANKTVVVA VCGSISAYKA CDLVSQLGKL NCTVRVAMTE AACKIIPELP LEVLSGAHVV 
TGISPEDCET VDVWLAEADA VVVAPASANT IAYVAMGEAP SAAAYAVLNA TCPVMVAPAM
NVNMYRNVAT QENLEMLRSR GYIVIPPVSG HLACGDDGEG KLPSIPELID WICREIACEK
DLAGKSILVS AGPTREAIDP VRFITNHSTG TMGYAIARRA MLRGADVTLV SGPVSLTPPP
FVNVVDITSA QDMFEAVSSR ADDQDAVIMA AAIADYRPAD VKGDKIKKAD GAFDIDFERT
PDTLAWLGAH RNGRTLLCGF SMETRDVIEN SRGKLQRKNV DMIAANSLRE PGAGFGTPTN
HLTFITAEGE IDLPLLSKGE AADRLLDELF KLTPKNA