Gene Shel_22470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_22470 
Symbol 
ID8396136 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2489405 
End bp2490112 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content62% 
IMG OID644986995 
Producthypothetical protein 
Protein accessionYP_003144606 
Protein GI257064934 
COG category[S] Function unknown 
COG ID[COG1738] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00697] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.728206 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCA CCACCAACAA CTATCTTGCC TGCGGCATGG TCTTCGCCGT GGCACTCGTC 
ATCTCCAACG TCGTCACCGG AAAGGTCATC CAGACCGGCA TTCCGTTGTT CGGCACCACC
ATCGCGTTGC CGGGCGCGGC GCTGTGCTAC GCCATCACGT TCCTGATGAC CGATGTCATC
GGCGAGATCT GGGGTCGCAA GGAAGCCCAG ACCGTGGTGC TGTGGGGCTT CGCGTGCCAG
CTTCTGGCCA CGGCGCTTAT CGTGTTCACC CAGGTGCTTC CGGCGGTGGA TCCGGACATG
CAGAACGCCT ACAACATGCT GCTGGGACAG AACGTCATCT TCGTCATCGG CAGCATGACC
GCGTACCTTA TCAGCCAGTC GTGGGATGTG TTCATCTTTC ATGCGATCCG CAACCGCGTG
CTGAGCTCGC ATAAGGGCGG CTACGCCTGG CGTTGGCTGT GGAACAACAT CTCCACCATG
ACGTCGCAGA TCATCGACAC GGTAGTGTTC ATCGGCATCG CCTTCGGCAT CGGCTTCGGC
TGGCTGTTCG ATCCGGCCAT GCTGCCGCAG CTGGGCGCCA TGATGGTGGG CCAGTATCTG
CTGAAGTTCT GCCTCGCGGC CATCGATACG CCCTTCTTCT ACCTGCTCAC CCGCGGCACC
CACGCGGCTC CCCAGGTCGC ATCTGACGCC GCCGAGAGCG CGGCCTAG
 
Protein sequence
MKRTTNNYLA CGMVFAVALV ISNVVTGKVI QTGIPLFGTT IALPGAALCY AITFLMTDVI 
GEIWGRKEAQ TVVLWGFACQ LLATALIVFT QVLPAVDPDM QNAYNMLLGQ NVIFVIGSMT
AYLISQSWDV FIFHAIRNRV LSSHKGGYAW RWLWNNISTM TSQIIDTVVF IGIAFGIGFG
WLFDPAMLPQ LGAMMVGQYL LKFCLAAIDT PFFYLLTRGT HAAPQVASDA AESAA