Gene Shel_22120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_22120 
Symbol 
ID8396101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2449525 
End bp2450289 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content51% 
IMG OID644986960 
ProductCAAX amino terminal protease family 
Protein accessionYP_003144571 
Protein GI257064899 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00629763 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGGAAAA TGGATTACGA GCAGCAAAAA GGAGTACTTG CGGTTTTGCT CTGGCCTCTC 
CTGTATATTT CAGGGATGGG TTTGTCCAAC TACATCGTAT ATCACGGCTA TCATATAGAG
TACGGTGGTG ACGGGTATGC AAATGCGATG CTTCCGTTCC TTGCGGTTCT GGCAGCCGGT
GCTCTAATCT GCCTGTTTGC CCAAAGAGAA CGGCTTGCCC TTCCGTGGAA AGAACGCGGC
AGGCTGTCGT TGTTCCTGAT TGTGTTCCTG CCTCTTGCGG CAATGGCGCT ATACTTCCTG
CTGACAAACG GTAGCTTTAC TAATGCGTTC ATGGCTCCGC TCGCGGCAAT GCTGCTTGTT
GGCGTGGCGG AAGAAACCAT GTTCCGCAGA ATTCTTTTCA TCCGACTGCT CGGGCTGTTC
CAGGGCCAAA GCTTCACAAA ACCGCTTCTG ATTTCCGCTG CATGCTTCAG CCTCCTTCAC
GCGGTGAATA TTTTTGGAGG TTTACCGGCG CCGCAGGTTC TTATGCAGAT TGCTGCAACC
TTTGTAGCTG GGCTGTTCTA TGTGCTTATG TTCGACTACA CCAGGAACAT CCATCTCCTG
ATCGTAATGC ACTTTTTATG GGACTACATC CTGTTCAGCG GAGCAACGCA GCAGATTCCC
GTCTATGCGA TCCTGATGGG TCTTTTGCAG GTTGCGGAGG TCATCATCAT GTTGTTGCTG
CTAGCCGGAA AATGGGGGCA AAACGTCGCA GCTGAACGTA CATAG
 
Protein sequence
MRKMDYEQQK GVLAVLLWPL LYISGMGLSN YIVYHGYHIE YGGDGYANAM LPFLAVLAAG 
ALICLFAQRE RLALPWKERG RLSLFLIVFL PLAAMALYFL LTNGSFTNAF MAPLAAMLLV
GVAEETMFRR ILFIRLLGLF QGQSFTKPLL ISAACFSLLH AVNIFGGLPA PQVLMQIAAT
FVAGLFYVLM FDYTRNIHLL IVMHFLWDYI LFSGATQQIP VYAILMGLLQ VAEVIIMLLL
LAGKWGQNVA AERT