Gene Shel_22040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_22040 
Symbol 
ID8396093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2444637 
End bp2445008 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content54% 
IMG OID644986952 
ProductCRISPR-associated protein Cas2 
Protein accessionYP_003144563 
Protein GI257064891 
COG category[S] Function unknown 
COG ID[COG3512] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01573] CRISPR-associated endoribonuclease Cas2 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00451798 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTGGTGG TCTGCGGAAC CAACCAAAGA CCGAGCGCCA TGCTCATGGC CACTGAGGCG 
AACGTGCGCC ATACGCTCGT ACCGCTGAAA CCGACGAACA AACATGGAAC GAAAACCTCA
TACCCGAAGT TCCGCAAAGC ACTGCGTGAC GACGGGTTCG TCATGGTGGC GCCTGAGCTG
TACATGCGCG TGGTGGCGAA CCGGAAAGCG ATTCGCAAGC ACCTCAAACG AATGGCCGAA
AAGCTGCCTG AAACGGACAC CGTCGTGACG CTTTCCCTTA CAGAAAAGCA GTGGGAGAAA
ATGGTGTATC TGGTGGGTGA AAAAAGCGAT CAAGAACTGC TAGTGGGAGG AAAATCCCAT
GTCATTCTAT AG
 
Protein sequence
MVVVCGTNQR PSAMLMATEA NVRHTLVPLK PTNKHGTKTS YPKFRKALRD DGFVMVAPEL 
YMRVVANRKA IRKHLKRMAE KLPETDTVVT LSLTEKQWEK MVYLVGEKSD QELLVGGKSH
VIL