| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_21900 |
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| Symbol | |
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| ID | 8396079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2425083 |
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| End bp | 2427452 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644986938 |
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| Product | (p)ppGpp synthetase, RelA/SpoT family |
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| Protein accession | YP_003144549 |
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| Protein GI | 257064877 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0098703 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAGA ACCGCAACGT ACAAGACGCC TCTTTCTCTG AGGCTTCGGA ACTCATACAA
GATTCGGGTC TGTTCGCGAA CGGCGAGCTG ACCGATGCCA TCGCTCCTTC GGCAAGGCCC
TCCGACAACG TTTCGCCCGA AATGCGTTTC AAGGAGCTGG TCCGGCTGGC CGGCGCCTAT
CTGCCGGAAG AGGACATGCT TCTTCTGGAG AAGGCGTACC GATTCGCAGA GTCCGCCCAC
AAGGGCCAGA AACGCAAGAG CGGCGAGCCG TTCATCGCCC ACCCGGTGGA GGTCGCCCTC
ATCCTGGCCG ACCTCAGGAT GGACGTGGAC ACGCTGTGCG CCGCCTTGCT GCACGACACG
GTTGAAGACA CCGACGTCAC CCACAAGGAC CTGCTGGATA CGTTCAACGA GAGCGTCGCC
AACCTGGTGG AAGGCGTGAC CAAGATCACC CAGGTCGAGG TCGAAAGCCT CACCGACGAG
CAGGCCGCCA CCATCCGTAA GATGTTCGTC GCCATGAGCC ACGACATCCG CGTCATCGTC
ATCAAGCTGG CGGACCGCCT GCACAACATG CGCACCTTGT CGGCCCTGCG CGAGGACCGC
CGCATCTTCA AGGCCCACGA GACGTTGGAA ATCTATGCTC CCATCGCGCA CCGCCTGGGC
ATCGGCTCCA TCAAATGGGA GCTTGAAGAC CTGTCCTTCT ATTACCTGGA TCCGGCACGC
TTCAAGCAGA TCGCCCAGAT GGTGGCCGAA AGCCGTGCCC AGCGCGAGGC CTATCTGTCC
CGCGTCATCG AGACGCTGCG CGACGATGTG AACGACCTGA ACATCAAAGC GCACATCGCC
GGGCGCCCGA AGCATCTGTA CTCCATCAAT CAGAAGATGA TCAACCGCGA GAAGGGGTTC
TCCGAAATCT ACGACCTGAT CGCCGTGCGC ATCATCGTGG AATCCGTCAA GGACTGCTAT
TCGGTGCTGG GCTCGGTCCA TTCGCTCTGG CATCCCATGC CCGGCCGTTT CAAGGACTAC
ATCGCCATGC CCAAGGCGAA CGGCTACCAA AGCCTGCACA CCACGGTCAT CGGCCCGGCG
GGCCGTCCGC TTGAGGTGCA GATCCGCACC GAGGAGATGC ACCGCCTGAG CGAATACGGC
GTCGCTGCCC ACTGGCGCTA TAAGGAGAAG GGAAACTCCA AAGCCGACGC TGCCTTCGAC
AAGCAGATCG CCTGGCTCCG TCAGATGGTG GACTGGCAGG ACGAGACCCA GGACTCCCGC
GAGTTCCTAA GCGAGCTCAA GGTTGACCTG GCACCCTCCG AAGTGTTCGT GTTCACGCCT
GCGGGCGAGG TCATGAGCCT GCGCGCGGGC TCCACGCCGA TCGACTTCGC CTACGCGGTC
CATACCGAAG TGGGCAACCA CTGCGTCGGC GCCAAGGTCA ACGGCGACAT CGTTCCGCTG
TCGTACCAGC TCAAGATGGG CGACCGAGTG GAAATCCTGA CGCAGAAAAG CGCCAGCCCG
TCCCGCGACT GGCTCAAAAT CGTGGCCACG GCCTCGGCGC GCAGCAAGAT TCGCAACTAC
CTGTCCAAGG TCAGCCGCAG CGACGACTTG GTGAACGGCC GCGACAAAGT GTCCCGTGAT
TTGAAGAAGC AGGGCTTCGG CTTGGGGTCC ACTGCTTCGA TTCGCGCGCA ACGCCAGGTG
GCTGACCAGC TGGGTTACCG CGATGTGGAC GACATGATGG TTGCCGTGGG TGCAGGCAAA
GAAACCGTGA ACCATGTGGT CAACCGCATA CTGAAGATTC TGGCTCCGGA GCCTGAAGAC
ACCGCGACCC CCGAGATGCT GGCAGGATTG CCGGCGGGCA CGCTTCTGCC TATGCTCACC
ACGGTGAAGA GGGCGCCGCG CCGCACCGCC CACGCGTCCA ACGGCGTTGT GGTGACGGGT
CTGGACGACG CGCCCGTGCG CCTGTCCAGG TGCTGCAACC CGGTGCCCGG CGACGAGATT
ATCGGCTTCA TCACCCGTGG ACGCGGCGTG TCCGTGCACA GGGCCGACTG TCCCAACGCT
TCGGACCTGT TGAAGGACCG TGGTCGCATC ATCGAGGTGA ACTGGGCCGA TTCCGTCCCC
AGTGAAACCT CCTATCAGGT TGAGGTGTAC ATCGAGGCCA TGGACCGTCT CAACCTGCTG
CGCGACATCA TCAACGCTTT GTCTGACACC GGCGTCAACG TCATCTCGTC AAGCACGTCC
AGCCATTCCG ACGGCATCGT GGAGATGCGC TACCTGTTCC AGGTGTCCCA AGTGTCCAAC
ATCGAGCGGA TCCTCGCCGA CTTGCGTTCC ATCGACGGCG TGTTCGAGGC GCGCCGCATG
CTTCCGGGCG ATGCAAGCCA TCGCCGCTAG
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| Protein sequence | MAENRNVQDA SFSEASELIQ DSGLFANGEL TDAIAPSARP SDNVSPEMRF KELVRLAGAY
LPEEDMLLLE KAYRFAESAH KGQKRKSGEP FIAHPVEVAL ILADLRMDVD TLCAALLHDT
VEDTDVTHKD LLDTFNESVA NLVEGVTKIT QVEVESLTDE QAATIRKMFV AMSHDIRVIV
IKLADRLHNM RTLSALREDR RIFKAHETLE IYAPIAHRLG IGSIKWELED LSFYYLDPAR
FKQIAQMVAE SRAQREAYLS RVIETLRDDV NDLNIKAHIA GRPKHLYSIN QKMINREKGF
SEIYDLIAVR IIVESVKDCY SVLGSVHSLW HPMPGRFKDY IAMPKANGYQ SLHTTVIGPA
GRPLEVQIRT EEMHRLSEYG VAAHWRYKEK GNSKADAAFD KQIAWLRQMV DWQDETQDSR
EFLSELKVDL APSEVFVFTP AGEVMSLRAG STPIDFAYAV HTEVGNHCVG AKVNGDIVPL
SYQLKMGDRV EILTQKSASP SRDWLKIVAT ASARSKIRNY LSKVSRSDDL VNGRDKVSRD
LKKQGFGLGS TASIRAQRQV ADQLGYRDVD DMMVAVGAGK ETVNHVVNRI LKILAPEPED
TATPEMLAGL PAGTLLPMLT TVKRAPRRTA HASNGVVVTG LDDAPVRLSR CCNPVPGDEI
IGFITRGRGV SVHRADCPNA SDLLKDRGRI IEVNWADSVP SETSYQVEVY IEAMDRLNLL
RDIINALSDT GVNVISSSTS SHSDGIVEMR YLFQVSQVSN IERILADLRS IDGVFEARRM
LPGDASHRR
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