Gene Shel_21220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_21220 
Symbol 
ID8396011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2353759 
End bp2355204 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content65% 
IMG OID644986871 
Productcobalamin biosynthesis protein CbiD 
Protein accessionYP_003144482 
Protein GI257064810 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1903] Cobalamin biosynthesis protein CbiD 
TIGRFAM ID[TIGR00312] cobalamin biosynthesis protein CbiD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.982335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACAAG GCGCACCGAG CTTCCCGTTT TTCACGCATC GGGACTGTCC GTATTTCCCG 
TGCCACGAGG GCGCGGATCT GGACACCTTC AACTGCGCGT TCTGCTACTG CCCTCTATAC
GCGTTGGGTC CCGCCTGCGG TGGCGATTTC CGCTACAACG ACAAGGGGCT GAAGGACTGC
ACCGGCTGTA CGAAGCCCCA CGAAGGCGAC GCGGGCATTC GCATGGTCAA AGAGCGTTTT
CGGGACCTTG CGGCTCTGGC TGCCATGCCG ATGCACGATT CTGCGCCCGA ACCTGTCGAG
AAACCCGCCT TCGAGCATTA TCTGCAGGTG GGGAAGAAGA ACATGCGCTG CGGCTACACC
ACAGGGACGT GCGCGGCTGC GGCCGCCCGC GGCGCGGCGG AGCTCTTGCT TGCCGGGACG
GCGCTGCCAG GTGTGCGCAT CTTGACGCCC GCGGGTATCG AAGTGCCGGT TGAGCTGGAA
GAATACTCAT CGGGAGACGG CTGGGCGCAG TGCGCGGTCC GCAAGGACGC GGGCGACGAC
CCGGATGTGA CCGACGGTTT GCTGGTGTTC GCGCGGGTCT GCCGGACCGA CGGGCCGGGC
GTGGACATCG ACGGAGGCGG AGGCGTGGGC CGCGTCACCC GCGAGGGGCT GGACCAGCCC
GTGGGTGCGG CGGCCATCAA CCATGTGCCG CGCGAGATGA TTGCCGAACA GGTTTCGGAG
GCGGCGTCGT CGAACGGATA CGTCGGCGGC CTGCGCGTGG AAATCTTCGT CCCGGGAGGG
GCGGAGGTGG CGCGGCGCAC CTTCAATCCG CGGCTCGGCA TCGAAGGCGG CATCTCCATT
CTGGGCACGT CGGGCATCGT GCGGCCCATG AGCGAGCAGG CCATCGTGGA CACTATTCGC
ACCGAAATGA ACGTACGCCG CGCGGAGGGC GCCACGCACC TGCTGGTCAT GCCTGGAAAC
TACGGGCGCG ATTATGCGGA AGGCGAGCTG GGCCTCAACG TGGACGAGGC CGTGCAATGC
TCTAACTATA TAGGAGAGGC GCTGGACATC GCCTCGAGCC TCGGATTCGA AACGCTGCTG
CTGGTGGGTC ACATCGGCAA GTTGGCGAAG GTGTCGGCAG GCAATATGAA CACCCATTCC
CGCACATCGG ACGCCCGTGC GGAAGTGCTG GCCGCCCACG GGGCGCTGGC CGGCGCATCC
TGCGATGCCG TGGAGGCCAT CATGCAGAGC ATCACCACCG ACGAAGCGCT GGCGATCTTG
CAGGATGAGG GCGTTTTAGG GCCTGCCATG GCGTCGCTGA CGCAGCGGCT GGGCGAGCGC
CTGCAGCAGC GTGCCGGCGA TAATCTGCAG GTGGAATGCA TTGTTTTCTC TCTGGCGCAC
GGGCTTTTGG GCAAGACCCC GGGCGCTGAC GGTTTGTTAC GTATCGAAGG GATCGCAGGT
TCATGA
 
Protein sequence
MEQGAPSFPF FTHRDCPYFP CHEGADLDTF NCAFCYCPLY ALGPACGGDF RYNDKGLKDC 
TGCTKPHEGD AGIRMVKERF RDLAALAAMP MHDSAPEPVE KPAFEHYLQV GKKNMRCGYT
TGTCAAAAAR GAAELLLAGT ALPGVRILTP AGIEVPVELE EYSSGDGWAQ CAVRKDAGDD
PDVTDGLLVF ARVCRTDGPG VDIDGGGGVG RVTREGLDQP VGAAAINHVP REMIAEQVSE
AASSNGYVGG LRVEIFVPGG AEVARRTFNP RLGIEGGISI LGTSGIVRPM SEQAIVDTIR
TEMNVRRAEG ATHLLVMPGN YGRDYAEGEL GLNVDEAVQC SNYIGEALDI ASSLGFETLL
LVGHIGKLAK VSAGNMNTHS RTSDARAEVL AAHGALAGAS CDAVEAIMQS ITTDEALAIL
QDEGVLGPAM ASLTQRLGER LQQRAGDNLQ VECIVFSLAH GLLGKTPGAD GLLRIEGIAG
S