Gene Shel_20640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_20640 
Symbol 
ID8395953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2291892 
End bp2292713 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content61% 
IMG OID644986813 
ProductFlp pilus assembly protein CpaB 
Protein accessionYP_003144425 
Protein GI257064753 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAGAC GGAAATCGGT CGTATTCGGC ATCCTGTGCG GCATCGCCTG CGCGTTGTGC 
GTGGCGATGT ACGCCCAACA GCTTCAGGCT GATGCCGATG CCCAACGCGC AGAGGCTTTG
GCTCGCTACG GTGGCGAGCA GACGGAAGTT TGGGTGGCAA CGCGCGACAT CGCACCGGGA
GAGACGGTCG ACGAGACCAA TGCGGAATAC AGGATGTGGC TCGTCGAGCT GCTTCCTCAC
GATGCCGTTT CCGATCTGGC CGGCCTGGAG AGCCGTGTTG CAACCAGCCC CATCGTGCAA
GGCGAGGTTA TCTCTGCGCA GCGGTTCGTA GCCGATGACG AGGCCCTCGG CACGCCGGTT
CCCGAAGGAT TGTGTGCCGT CAGCGTTCCC GCAGAAGATG TCGCGACGGT GGGCGGCTCC
ATAAGGGCCG GCAGCAGGGT TGACGTGTAC GTTTCTTCGG GAACAACGAC CGACCTTCTT
GCCCATGACG TGCTGGTCTT GTTCACGAGC GCATCTTCGG CCGACGGTTC GGAGGCCATC
TCCTGGGCAA CCCTTGCCGT CGAGCCCGAA ATGGTACAGG AGCTCATCTC TGCCGCCGAA
AGGACGAGCC TGTATTTCTC CCTTCCTTCG GATTCCGTGT TGGCTGATGG TTCGTATGCA
ACCGAATCCG AAAAAGGCGA GGCGGACGGA CCCCAGGAAG CCGAACCCGA GCCAGAGGTC
GAGGCTAAAT CGGATGAAGG CGAACCCGAT GCTTCGGCTG ACACGGCCTT TGATGAAGGT
CCTTCGACGG AATCCAAATC CCAGGAAGAA GAGGTGCTTT GA
 
Protein sequence
MQRRKSVVFG ILCGIACALC VAMYAQQLQA DADAQRAEAL ARYGGEQTEV WVATRDIAPG 
ETVDETNAEY RMWLVELLPH DAVSDLAGLE SRVATSPIVQ GEVISAQRFV ADDEALGTPV
PEGLCAVSVP AEDVATVGGS IRAGSRVDVY VSSGTTTDLL AHDVLVLFTS ASSADGSEAI
SWATLAVEPE MVQELISAAE RTSLYFSLPS DSVLADGSYA TESEKGEADG PQEAEPEPEV
EAKSDEGEPD ASADTAFDEG PSTESKSQEE EVL