| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_19910 |
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| Symbol | |
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| ID | 8395880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2224905 |
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| End bp | 2228462 |
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| Gene Length | 3558 bp |
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| Protein Length | 1185 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644986742 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003144354 |
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| Protein GI | 257064682 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01635] phage virion morphogenesis (putative tail completion) protein
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.168959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCCAAG CAGAAAAAAG CGCTCCCACC GGCGTCTACC GGGAACGTCG CAGCTTCGCG
AAGATCCCCG ACGTCATGGA TGTGCCCAAC CTGATTGCCA TCCAGACTGA GAGCTTCAAG
TGGTTCATGA ACGAAGGTAT CACGGATGCC TTCAATTCCG TGTGCCCCAT CGAAAGCTCC
TCGAAAGACA TGTATGTCGA GTTTGGCGAT CATGAGTTCG GCGAACCTAA GCAATCCGTG
GACGAATGCA AGGAGAAGGA CGCCTCCTAT CAGGCTCCGC TCACTGCACA GATCCGCTTC
GTGAACCGTG AAACCGGCGA AATCAAGGAA CAAGACGTCT TCATGGGCGA CTTCCCCCTG
ATGACTCCCC GCGGCACGTT CATCATCAAC GGCACTGAGC GTGTCGTCGT ATCCCAGCTG
GTCCGTTCCC CCGGCGTGTA CTTCAGCGCC GAGCGCGACA AGACCTCCAA TAAGACCATC
TACGGCGCGA AGGTCATCCC TTCCCGCGGC GCATGGCTCG AGTTCGAAAC CGATAAGCGT
GACATCCTTT CCGTCCGCAT CGACCGCAAG CGCAAGCAGC CGGCCACGCT GCTTTTGCGC
GCCCTGGGCA TCGCCGAGAC CCGTGAGGAG ATCATTGACG TCCTCGGCAG CTCCGAGATG
GTGCTGCGCA CCCTCGACCG CGACCCCGCC ACCACCCGCG AGGAAGCCCT CATCGAGCTG
TACAAGCGTT TCCGTCCGGG CGAGCCGCCC ACCTTGGATT CGGCCAGCAC GCTGCTGGAG
GGCCTGTTCT TCAACCCCCA GCGCTACGAC CTGGCCCGCG TCGGCCGTTA TAAGGCCAAC
AAGAAGCTGG GCTTCGATCC CGAAGGCGAA GGCGCCGATA GCTCCACCCT TACCGAGCAG
GACATCGTCG CAACCATGCG TTACGTCGTC GCTCTGCACG AAGGTGAGGA AGGCTTCACC
ACCGACGACA TCGACCACTT CGGCAACCGC CGCATCCGCA CCGTGGGCGA GCTGATCCAG
AACCAGTTCC GCATCGGCCT GTCCCGTATG GAGCGCGTTG TCCGCGAGCG CATGAGCATG
CAGGAGGCTG ACGAGATCAC CCCGCAGTCC CTGGTGAACA TCCGCCCCAT CGTGGCCGCC
ATCAAAGAGT TCTTCGGCTC CTCGCAGCTG TCGCAGTTCA TGGACCAGTC CAACCCGGCC
GCAGGCATCA CGCACAAGCG TCGTCTGTCC GCTCTGGGCC CGGGCGGCCT GTCCCGCGAG
CGCGCAGGCT TCGAGGTCCG CGACGTCCAC ACCTCCCACT ACGGTCGTAT GTGCCCCATC
GAGACGCCTG AAGGCCCGAA CATCGGCCTG ATCGGCTCGC TGGCAACCTA CGCACGCGTC
AACAGCTACG GTTTCATCGA GACCCCGTAC CGCCGCGTCG TCGACGGCAA GGTCACCGAT
GAAGTCGTCT ACATGACCGC CGACGAGGAG GAAAAACACA CCATCGCCCA GGCGAACGAC
TACTTCGACC AGGAGACCCG CGAGTTCGGC CGCACGGTCG ACGGCGTGTT CGTGCCTTCT
ACGAAGGTCC TGTGCCGCAC TACCGACGCC AAGGGCGTCT TCGGCGAGCC TGACGAAGTC
GATCCCCAGA TGGTCGACTT CATGGACGTG TCGCCGCGCC AGATGACGTC GGTCGCCACG
TCGCTCATTC CGTTCCTCGA GCACGACGAC GCTAACCGCG CTCTGATGGG TTCCAACATG
CAGCGTCAGG CAGTGCCGCT GCTGAACCCG CATGCGCCTT ACGTCGGTAC CGGCATCGAG
CATCGCATCG CCGTTGACTC CGGCGAAATG CTCATCGCCC AGAACCCCGG CGTGGTCGAC
TACGTCGACG GTTCTACCAT CATCATCCGC ACCGACGACG GTGATTTCGA CGAGTACCTC
ATTCCGAAGT TCCAGCGTTC CAACCAGTCC GGCTGCATCA ACCACAAGCC CATCGTCCGC
AAGGGTGACG AAGTTCACTC CGGCGACGTG CTGGCCGACG GCCCCAGCTG TGACCATGCT
GAGCTGGCTC TGGGTCAGAA CCTGCTCATC GCTTACATGA CCTGGGAAGG CTATAACTAC
GAGGACGCTA TCATCATCAG CGAGCGCGTT GTGGCCGAGG ACCTGCTGAC GTCCGTCCAC
ATCTCCGAGT ACGAGATCGA CGCTCGCGAC ACCAAGCTGG GCCCCGAAGA AATCACCCGC
GAAATCCCGA ACATTTCCGA GGACATGATT TCCGACCTGG ATGCCGACGG CATCATCCGC
ATCGGCGCCG AGGTGTTCCC TGGCGATGTT CTGGTCGGCA AGGTCACCCC GAAGGGCGAG
ACCGAGCTCA CCGCCGAGGA GCGCCTGCTG CGCGCCATCT TCGGCGAGAA GGCCCGCGAG
GTCCGCGACA CGTCCCTGAA GGTGCCTCAC GGCGCCGGCG GACGCATCGT TGGCATCAAC
CGCTTCAGCC GCGAGAACGG CGACGATTTG GCTCCCGGAG TCAACGAGCT CGTCCGCGTC
TACATCGCTC AGAAGCGTAA GGTCCAGCAG GGCGACAAGC TGTCCGGCCG TCACGGCAAC
AAGGGCGTCA TCTCCCGCGT GCTGCCGGTC GAGGACATGC CGTACCTGGC GGACGGCACG
CCTATCGACG TCATGCTCAA CCCGCTGGGC GTTCCTTCCC GTATGAACGT CGGCCAGCTT
CTGGAATGCC ACCTGGGCTG GGCCGCAAAG TGGGGCTGGA ACGAAGAGTC CGACGAGCCC
GTCGAGGGCC CGATGTTCGT TGCGACGCCC GTCTTCGACG GCGCGACCGA GGAAGAGATT
GCCGACGTCA TCCAGAAGGC GAATCGTAAC CTCATCAACG TGCATCATGC CAAGTACGGC
GACAAGGCCC GCGAGGAACT CGTTCCCCAG CTGAACGCCT TCGGCAAGAC CACCCTGTAC
GACGGTCGTA CCGGCGAGCC CTTCCGCGAG CCCATCACCG TCGGCTACCC CTACATCCTG
AAACTGGGCC ACATGGTCGA CGACAAGATC CACGCGCGTT CGACCGGTCC TTACAGCCTC
ATCACGCAGC AGCCTCTGGG CGGCAAGGCC CAGTTCGGCG GCCAGCGTTT CGGCGAGATG
GAAGTCTGGG CCCTCTATGC ATACGGCGCA TCCAACGTCC TGCAGGAGAT CCTGACCGTC
AAGTCCGACG ACACCGCGGG TCGCGTGAAG GCATACGAGG CCATCGTCAA GGGCGAGAAC
ATCCCGCCTG CAGAGGTGCC CGAATCCTTC AAGGTTCTGC TTAAGGAAAT GAAGTCCCTC
GGCCTGAACG TCGAGATGGT GGGCGAGGAC AAGGCCACCA TCGACCTGGA CGCCGAATAC
GACGAGAAGC CCAACGCCGA GGACGCCATG CTGTCTTCCA TGATGGCCAG CGCCAAGGCG
GAGGAGACCG TCGAATCCGA CGCCCTGAAA GACATCGCCG AAGACCTGCG CACGCTGATG
GCCGATACCG CTGACGACGA CGACACCCTG TTCGGCGGCG ACGAGCCGGA AGCCGACGGC
GAAGGAGAGG ATCGATAA
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| Protein sequence | MAQAEKSAPT GVYRERRSFA KIPDVMDVPN LIAIQTESFK WFMNEGITDA FNSVCPIESS
SKDMYVEFGD HEFGEPKQSV DECKEKDASY QAPLTAQIRF VNRETGEIKE QDVFMGDFPL
MTPRGTFIIN GTERVVVSQL VRSPGVYFSA ERDKTSNKTI YGAKVIPSRG AWLEFETDKR
DILSVRIDRK RKQPATLLLR ALGIAETREE IIDVLGSSEM VLRTLDRDPA TTREEALIEL
YKRFRPGEPP TLDSASTLLE GLFFNPQRYD LARVGRYKAN KKLGFDPEGE GADSSTLTEQ
DIVATMRYVV ALHEGEEGFT TDDIDHFGNR RIRTVGELIQ NQFRIGLSRM ERVVRERMSM
QEADEITPQS LVNIRPIVAA IKEFFGSSQL SQFMDQSNPA AGITHKRRLS ALGPGGLSRE
RAGFEVRDVH TSHYGRMCPI ETPEGPNIGL IGSLATYARV NSYGFIETPY RRVVDGKVTD
EVVYMTADEE EKHTIAQAND YFDQETREFG RTVDGVFVPS TKVLCRTTDA KGVFGEPDEV
DPQMVDFMDV SPRQMTSVAT SLIPFLEHDD ANRALMGSNM QRQAVPLLNP HAPYVGTGIE
HRIAVDSGEM LIAQNPGVVD YVDGSTIIIR TDDGDFDEYL IPKFQRSNQS GCINHKPIVR
KGDEVHSGDV LADGPSCDHA ELALGQNLLI AYMTWEGYNY EDAIIISERV VAEDLLTSVH
ISEYEIDARD TKLGPEEITR EIPNISEDMI SDLDADGIIR IGAEVFPGDV LVGKVTPKGE
TELTAEERLL RAIFGEKARE VRDTSLKVPH GAGGRIVGIN RFSRENGDDL APGVNELVRV
YIAQKRKVQQ GDKLSGRHGN KGVISRVLPV EDMPYLADGT PIDVMLNPLG VPSRMNVGQL
LECHLGWAAK WGWNEESDEP VEGPMFVATP VFDGATEEEI ADVIQKANRN LINVHHAKYG
DKAREELVPQ LNAFGKTTLY DGRTGEPFRE PITVGYPYIL KLGHMVDDKI HARSTGPYSL
ITQQPLGGKA QFGGQRFGEM EVWALYAYGA SNVLQEILTV KSDDTAGRVK AYEAIVKGEN
IPPAEVPESF KVLLKEMKSL GLNVEMVGED KATIDLDAEY DEKPNAEDAM LSSMMASAKA
EETVESDALK DIAEDLRTLM ADTADDDDTL FGGDEPEADG EGEDR
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