| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_19900 |
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| Symbol | |
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| ID | 8395879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 2220513 |
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| End bp | 2224904 |
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| Gene Length | 4392 bp |
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| Protein Length | 1463 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644986741 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003144353 |
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| Protein GI | 257064681 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAT TCGACGTGAA CAACTTCTCT GCGCTGCGCA TCTCCCTGGC CAGCGCCGAA
GATATTCGCA GCTGGTCTCA TGGCGAGGTC AAAAAGCCCG AGACCATCAA CTACCGTACG
CTCAAGCCCG AGAAGGACGG TCTTTTCTGT GAGAAGATCT TCGGTCCCAC CAAGGACTGG
GAGTGCAGCT GCGGCAAATA CAAGCGCGTC CGTTTCAAGG GCATCGTCTG CGAGCGCTGC
GGCGTCGAGG TCACTCGCGC CAAGGTGCGC CGCGAGCGCA TGGGCCACAT CGAGCTGGCA
GCTCCCGTGA GCCATATCTG GTACTTCAAG GGCAGCCCCA GCCGTCTTGG CTACCTGCTG
GACATCCCGC CCAAAGAGCT GGAGAAGGTG CTGTACTTCG CATCCGCCAT CATCACCTGG
GTTGACGAGG AAGCCCGCGA CGAAGACGCC GACGACCTGC GCGATGAGCT GGCCGCCGAC
CTCGAAGAGC TGGACGCCGA GCGTGACCGC CTGATCGAGG CCACCCGCCG TCTGTCCGTG
GACTATGTGC CCGAGGACGA CGACTTCGAA GACGACATCG ACGACGACGA GCGCCTGACC
CCCGAAGAGG TGGCCGAGGA AATCGCCGAC ATCTACGAAG AGTACAACGA GCGCAAGGAG
CTGCGTTCCG AGGCTCTGGA CGCCTTCATG CGCATCGCCC CCAAGCAGCT CATTCCCGAC
GAGGCCCTGT ACCGTGAGAT TCGCCTGAAC TACAGCGATT ACTTCCACGG CGGCATGGGA
GCCGAGGCCG TCCGCGAACT GCTGGAGGCC ATCGACCTGG AGAAGGTGTC CGAGGAGCTC
AAGGAAATCG TCGAGACTGG CAAGGGCCAG AAGCGCCTGA AGGCCGTCAA GCGCCTGAAG
GTCGTGGACG CGTTCCTGAA GTCCGACAAC AGCCCGGCCG ACATGATCCT GGACGTCATC
CCGGTTATCC CGCCCGATCT GCGCCCCATG GTGCAGCTCG ACGGCGGCCG CTTCGCCACG
TCCGACCTGA ACGACCTGTA CCGTCGCGTC ATCAACCGCA ACAACCGCCT CAAGCGCCTG
CTGGACCTGG GCGCCCCTGA GATTATCGTA AACAACGAGA AGCGCATGCT TCAGGAGGCC
GTCGACAGCC TGTTCGACAA CGGCCGCCGC GGCCGCCCCG TCACGGGCCC CGGCAACCGT
CCTCTGAAGT CGCTGTCCGA CACCCTCAAG GGCAAGCAGG GCCGCTTCCG TCAGAACCTG
CTCGGCAAGC GCGTCGACTA CTCCGGCCGT AGCGTTATCG TCGTCGGCCC GAACCTGAAG
CTGCACCAGT GCGGTCTGCC TCAGCAGATG GCCCTGGAAC TGTTCAAGCC CTTCGTCATG
AAGCGCCTGG TCGAGCTCGA GTACGCTGCC AACATCAAGG CTGCAAAGCG TGCCGTCGAC
CGTGGCGCCA GCTACGTGTG GGACGTCCTC GAAGAGGTCA TTCAGGATCA CCCGGTCCTG
CTGAACCGCG CACCTACGCT GCACCGTCTG GGTATTCAGG CCTTCGAGCC TGTCCTGGTC
GAGGGCAAGG CCATCAAGCT GCATCCGCTG GTTTGCACCG CGTTCAACGC AGACTTCGAC
GGCGACCAGA TGGCCGTCCA TGTGCCTCTG GGTAACGAGG CTCAGGCCGA GGCCCGCGTG
CTCATGCTGT CTTCCAACAA CATCAAGAGC CCGGCCCATG GCCGTCCGCT GACCATTCCT
ACCCAGGACA TGGTTATCGG CATGTACTAC CTGACCACGC CTCGCGACGG ATTCCCGGGC
GAGGGCCGCA CCTTCATCGA CTTCGACGAC GCCCTGAACG CCTACGACGC CCACGCCGAT
GTGGACCTGC AGGCCAAGAT CAACGTGCGT CTGAGCAGGG ACGTCAAGGT CGCGAACTCC
TTCGACGAGC TCGAGGAGCA CAAGGCAGGC GAGCGCATCC AGACCACCAT CGGCCGCATC
ATCTTCAACT CGGTGCTGCC TGAGGACTAT CCGTTCGTCA ACTTCGTGGT CGACAAGAAG
CAGATCGGCC GCCTGATCGA GGACTGCTGC AACCGCTACA GCCTGTCCGA GATGACGCCG
ATTCTCGACG GCATCAAGAA CCTTGGCTTC CACTACGCCA CCCGCGCGGG CATTACGGTT
TCCGTCTACG ACGCGACCAT CCCGCCCGAG AAGGAATCCA TCCTGGCCGA GGCCGACAAG
AAGGTCGCCG CCATCGATGA GGACTACGAG TGGGGTATTC TGAACGAAGA TGACCGCCAC
CAGCAGGTCG TCGACATTTG GAACGAGGCC AACGAGGCCG TCGGCGAGGC CATGGACAAG
AACTTCGACC GCAACAACCC CATCTACATG ATGGCGACGT CCGGCGCTCG AGGCAACATC
AAGCAGATTC GTCAGCTCGC CGGCATGCGC GGCCTGATGG CCGACCCGAA GGGCGAGATC
ATCGACCGAC CCATTAAGGC GAACTTCCGC GAAGGCCTGT CCGTGCTGGA GTACTTCATC
TCCACCCACG GCGCCCGTAA GGGTCTGACC GACACCGCTC TGCGTACCGC CGACTCCGGT
TACCTGACCC GTCGTCTGGT CGATGTCGCA CAGGACGTCA TCGTCCGCGA AATCGACTGC
GGTAGCACCG AGGGCGTTCC CTACCCGCTG TTCAACGAGA AGGGCGACAT CGACGGCAAC
CTCATCGGCC GCTGCATGAA CGAGGGTGCG GGACACCTGG CTGCAGGCGA CTACATCGCT
TCCATGGACG ACCTGAAGCA GCTCGTCGAA GCCGGTGTCA CCGAGGTCAA CATCCGTACG
GTCATGACCT GCCATGCCGA GCGCGGCGTG TGCCAGAAGT GCTACGGTTG GGACCTGGCC
AACGGCCGCC CCGTCAACAT CGGCACGGCT GTCGGCATCA TCGCGGCCCA GTCCATCGGC
GAGCCCGGCA CGCAGCTGAC GATGCGCACG TTCCACGCCG GCGGCGTCGC GGGCGACGAC
ATCACGCACG GTCTGCCTCG TGTCACCGAG CTTTTCGAAG CCCGTAAGCC CAAGGGCCTG
GCCGTTCTGG CTGAAATCGC CGGTACGCTG CAGGTCACGG GTGACAAGAA CACCAAGACC
CTGACCATCC ATGACCAGGA AGGCAACGTC CGCGAGTACG TGGTTTCCGC CCGTACGCAG
CTGCAGGCAG GCGTCCGCGA CGGCAATCAG GTCAAGGTGG GCCAGCAGCT CACCAAGGGT
TCCGTGAACC CCCACGACCT GCTGCGTCTG ACCGACCCGA ACACCACGCT GCGCTACATC
GTGTCCCAGG TCCAGGACGT GTACGTCTCC CAGGGCGTGG ACATCAACGA CAAGCACATC
GAGGTCATCG CACGCCAGAT GCTGCGCAAG GTGGCCGTCA TGTCCGCAGG CGACTCCCTC
CTGTTGCCTG GCCGCCAGGT GAATCGCTAC GAGTTCGAGC GCATCGCCAA CGAGCTCATC
GCCGAAGGCA AAGAGCCGCC CGTGGGCCAG CCGCTGCTGT TGGGCATCAC CAAGGCGTCT
CTGGCCACCG ACTCGTTCCT GTCCGCCGCA TCCTTCCAGG AAACCACCAA GGTCCTGACG
GATGCCGCTA TCGAGGGCAA GACCGACACG CTGGCCGGCC TGAAGGAGAA CGTCATCATC
GGCAAGCCGA TTCCCGCCGG TACGGGCCTG CCTCGCTACC ATAAGGTCGG CCTGACCTAC
CATGGTCAGC CGGTGTCCGG CATCGACAAC GAGTCGCTGC CCGATGTCGC TCCCTCCGAG
CTGCGTGAGA TCGAGGAACT GCTGCCCCAG CCGCAGGATT GGTCGCTGGA CGACACCTAC
GCCGGCTACT CCAACATGTA CGGCACCAAC AGCTACCGCG GCCTGCGCGG CCAGAAGCTG
TCCGACGAGG ATGCCCGCCT GTACCTCTAT GACGACCTGG GAGTTTCCCA GCGCTGGGCC
AACAAGTTCA GCGAGGCCGG CATCGAGACC GTGGGCGATC TGGTCGGCTA CACCGAAGAC
GAGCTGCTGC GTATCGAAGG CATCGGCGCC AAGGCTCTCG AGGAGCTCAA GGCGGGCCTG
CAGGACCATG GTCTGGAAAG CTTGCTCGAG GATGACCTCA CGGCCACGAA CGACGAGATG
AGCCAGCTGC TCGACATGGT CTTCAGCCCC GACGACACGG TGCTCATCGG CGGCGACGCC
CCGGCAACCT TCAACACCGA CGGTGAGGAG ATGCTGGGCG AGGCCCTGCC CCCGCGTTCA
TACCACCGCG ACCTGAGCGA GCTCGACGCT CTGCTCGGTG GTCTGGGCGA CTTCGGATTC
GGCGAGACCT CCGCTTCGGC CGAGGCTGAC GACGAAGAAG AAGACGAAGA GGAAGACGAC
GAGGAGGAGT AA
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| Protein sequence | MTEFDVNNFS ALRISLASAE DIRSWSHGEV KKPETINYRT LKPEKDGLFC EKIFGPTKDW
ECSCGKYKRV RFKGIVCERC GVEVTRAKVR RERMGHIELA APVSHIWYFK GSPSRLGYLL
DIPPKELEKV LYFASAIITW VDEEARDEDA DDLRDELAAD LEELDAERDR LIEATRRLSV
DYVPEDDDFE DDIDDDERLT PEEVAEEIAD IYEEYNERKE LRSEALDAFM RIAPKQLIPD
EALYREIRLN YSDYFHGGMG AEAVRELLEA IDLEKVSEEL KEIVETGKGQ KRLKAVKRLK
VVDAFLKSDN SPADMILDVI PVIPPDLRPM VQLDGGRFAT SDLNDLYRRV INRNNRLKRL
LDLGAPEIIV NNEKRMLQEA VDSLFDNGRR GRPVTGPGNR PLKSLSDTLK GKQGRFRQNL
LGKRVDYSGR SVIVVGPNLK LHQCGLPQQM ALELFKPFVM KRLVELEYAA NIKAAKRAVD
RGASYVWDVL EEVIQDHPVL LNRAPTLHRL GIQAFEPVLV EGKAIKLHPL VCTAFNADFD
GDQMAVHVPL GNEAQAEARV LMLSSNNIKS PAHGRPLTIP TQDMVIGMYY LTTPRDGFPG
EGRTFIDFDD ALNAYDAHAD VDLQAKINVR LSRDVKVANS FDELEEHKAG ERIQTTIGRI
IFNSVLPEDY PFVNFVVDKK QIGRLIEDCC NRYSLSEMTP ILDGIKNLGF HYATRAGITV
SVYDATIPPE KESILAEADK KVAAIDEDYE WGILNEDDRH QQVVDIWNEA NEAVGEAMDK
NFDRNNPIYM MATSGARGNI KQIRQLAGMR GLMADPKGEI IDRPIKANFR EGLSVLEYFI
STHGARKGLT DTALRTADSG YLTRRLVDVA QDVIVREIDC GSTEGVPYPL FNEKGDIDGN
LIGRCMNEGA GHLAAGDYIA SMDDLKQLVE AGVTEVNIRT VMTCHAERGV CQKCYGWDLA
NGRPVNIGTA VGIIAAQSIG EPGTQLTMRT FHAGGVAGDD ITHGLPRVTE LFEARKPKGL
AVLAEIAGTL QVTGDKNTKT LTIHDQEGNV REYVVSARTQ LQAGVRDGNQ VKVGQQLTKG
SVNPHDLLRL TDPNTTLRYI VSQVQDVYVS QGVDINDKHI EVIARQMLRK VAVMSAGDSL
LLPGRQVNRY EFERIANELI AEGKEPPVGQ PLLLGITKAS LATDSFLSAA SFQETTKVLT
DAAIEGKTDT LAGLKENVII GKPIPAGTGL PRYHKVGLTY HGQPVSGIDN ESLPDVAPSE
LREIEELLPQ PQDWSLDDTY AGYSNMYGTN SYRGLRGQKL SDEDARLYLY DDLGVSQRWA
NKFSEAGIET VGDLVGYTED ELLRIEGIGA KALEELKAGL QDHGLESLLE DDLTATNDEM
SQLLDMVFSP DDTVLIGGDA PATFNTDGEE MLGEALPPRS YHRDLSELDA LLGGLGDFGF
GETSASAEAD DEEEDEEEDD EEE
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