Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_19550 |
Symbol | |
ID | 8395844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 2189190 |
End bp | 2190311 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644986706 |
Product | uroporphyrinogen-III decarboxylase |
Protein accession | YP_003144319 |
Protein GI | 257064647 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01463] methyltransferase, MtaA/CmuA family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.288142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000066757 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATCGTG CAGAGCTCGA GAAGCTGTTC TACGATTACA AAGATGAAAT GACCCAAGGG GAACGCGCTG CGGCGTATGC TTCCGGCGAG GAGGCGGATT ACATCCCGTT CTCCATCCAG AGTAACGAAG AGGCCATGGC CGACCTGTTC GGATACACTA CCGCTCAGTG GCGTAACGAC CCCAAAGTGC ACATCGACGT CATCAAACGT CGGCGCGACG AGTTCGGCAT CGTGGGTCTG GCCGCGGGCC AGCGCTTGCG CACGGTCGGC CAGGCGGTCG GAACGAAGAT GTTCTTCCCC GAGGTGGGCA TCGACCGAGT CGAGACGCAT GCGATACAGA CGCTTGCCGA CCTCGACAAG GTTCTGTCCG TCGATCCGTA CACAAGCCCG GTATATCAGG CCATACTCGA GCGCGGACGC ATCCTTAAGG ACGAGTTCCC CGAGATGGGC ATCGGAACGT CTGTCGCGGG TCCCTTCACG GTGGCTTCGA CCATCATGCC TATCGAGCGC CTGCTGCGCG ACACACGCAA GCATCCGCAG GCGGTGCGCG ACCTGCTGGA TTTCGCGGTG TACCATTCCG TGGCATGGGC GGAGATGTTC GCCAAGGAGT TCGGCGGCGG CCCATGCACC ATCTGCGACC CGGTAAGCTG CGCCGACATC CTCAGCCGCA AGCAGTATCT CGAATTCTCG ATGCCCGCGC AGGAGAAGCT CATCGAGGGT CTGACCAAGG CGTTGGGCCG CAAACCCGGC TTGCACATTT GCGGCAAGAC CAACCCCTTG TGGGACGACA TGGCCAACTT GAAGGTTGCG AGCTTCAGCG TCGACAACCG CGAGAGCCTC GCTGAAGCCA AGGACCGCAT GGGTGACAAG TTCGCGCTGG TCGGCAATGT GCCTCCCGTG GACGTCATGC TGAAGGGCTC CATTGATGAC GTTATCGAGT CGTGCAAGAA ATGCATTCGC CAAGGTGCCG AAAGCCCGCT TGGCTACAAC CTCGGAACCG GCTGCCAGGT GCCCATCGGA ACCCCGCGTG AAAACTTCAT GGCGTTCATC TACGCGGCCC GCACCTACGG ACGCGGCGCC CGCAAGGGAT GCATGCCCAA GGGAATGGAA GGCCAGTTGT AG
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Protein sequence | MDRAELEKLF YDYKDEMTQG ERAAAYASGE EADYIPFSIQ SNEEAMADLF GYTTAQWRND PKVHIDVIKR RRDEFGIVGL AAGQRLRTVG QAVGTKMFFP EVGIDRVETH AIQTLADLDK VLSVDPYTSP VYQAILERGR ILKDEFPEMG IGTSVAGPFT VASTIMPIER LLRDTRKHPQ AVRDLLDFAV YHSVAWAEMF AKEFGGGPCT ICDPVSCADI LSRKQYLEFS MPAQEKLIEG LTKALGRKPG LHICGKTNPL WDDMANLKVA SFSVDNRESL AEAKDRMGDK FALVGNVPPV DVMLKGSIDD VIESCKKCIR QGAESPLGYN LGTGCQVPIG TPRENFMAFI YAARTYGRGA RKGCMPKGME GQL
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