Gene Shel_19160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_19160 
Symbol 
ID8395805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2149843 
End bp2150913 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content56% 
IMG OID644986667 
Productsite-specific recombinase XerD 
Protein accessionYP_003144281 
Protein GI257064609 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.768051 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.148917 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTTA GGTGCGAAGG CAACGGTACT TGGACCGCGC AAGTCTGGTA CCGGGATTCC 
CGCAACCGCC GGCGCCACAC CATCAAACGC GGATTCAAGA GCGAAGAAGA GGCCAATGAA
TGGGAGGCTT CGTTCTCAAA GGCCGACTCC GAGAACATGA GCATGAAGTT CTCGCAGTTC
ATGAATCTGT ATACCGAGGA CATGAGGCCG CGCCTACGCG AGTCCACATG GCATACGAAG
CAGCACATGA TCGACAAGAA AATCATGCCA TTTTTCGGCG AGATGAGCAT GGACGAAATC
ACGACCATTG ATGTCATTCG CTGGCAGAAC GAGATGATGT CCGAGAAGGG GCCGAAAGGC
ACTGGTTACG CCGAGACGTA CCTCCGCGCC GTAAACAACC AGCTCAATGC GATATTTAAC
CACGCCGTAA GGTACTACGG GCTACCCAAG AGCCCCTGCG CGCGAGTCGA CAAGATGGGT
TCCAAGCAAG GAGATGAAAT GAAGTTCTGG ACTAAAGAGG AATATCTCAA GTTCGCAGAG
GCCATCATGG ACAAGCCTGA CTCGTTCACG GCATTCGAGA TCCTCTACTG GTGCGGCCTG
CGCGTCGGCG AGATGCTGGC GCTCACTCCC TCGGACATCA ACCTGGAGCG ATCGACCATC
TCGGTGACAA AGACGTTTCA GCGCATACAC GGCAGGGACA CCGTCACCGA GCCGAAGACC
AAGAAGTCAA TCAGGCTGGT GACGATGCCG AAGTTTCTCT CCGAGGAAAT CGCCGAGTAC
ATAGCGTCGC TTGACGTCGG AGACCACGAC CGACTCTTTC CGTTCACCAA AACGCGCATG
CACCACGAGA TGGATCGGGG CTGCAAGGAG TCCGGCGTCA AGAGGATTAG AATCCACGAC
CTGCGGCATA GCCACGTGTC GCTGCTCATC GACATGGGAT TTTCGGCCGT GGCAATCGCG
GATCGCGTCG GGCACGAGAG CGCCAACATC ACGTATCGCT ATGCCCACAT GTTCCCCAAC
AAGCAGCGGG ATATGGCAAG CGCGCTCGAC GCTGGGAGGA GAAAGATCTG A
 
Protein sequence
MSVRCEGNGT WTAQVWYRDS RNRRRHTIKR GFKSEEEANE WEASFSKADS ENMSMKFSQF 
MNLYTEDMRP RLRESTWHTK QHMIDKKIMP FFGEMSMDEI TTIDVIRWQN EMMSEKGPKG
TGYAETYLRA VNNQLNAIFN HAVRYYGLPK SPCARVDKMG SKQGDEMKFW TKEEYLKFAE
AIMDKPDSFT AFEILYWCGL RVGEMLALTP SDINLERSTI SVTKTFQRIH GRDTVTEPKT
KKSIRLVTMP KFLSEEIAEY IASLDVGDHD RLFPFTKTRM HHEMDRGCKE SGVKRIRIHD
LRHSHVSLLI DMGFSAVAIA DRVGHESANI TYRYAHMFPN KQRDMASALD AGRRKI