| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_18910 |
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| Symbol | |
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| ID | 8395780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 2120030 |
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| End bp | 2121913 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644986642 |
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| Product | type IV secretory pathway, VirD4 component |
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| Protein accession | YP_003144256 |
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| Protein GI | 257064584 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.755696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.106526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCC GCCCATCCGG CACCGTAGCC GCAACAGTGC TGTCCGTCGC CGCGTTCGCC
GCGGCCGACG CGTACGCCGC GTGCCTCATG TCGCTTCCCG GAAACGCCGC CATGAACCTC
ATGGCCGCGG TGGAGGCCCT CCCCGCATAC ATAGCCTCAC ACGGCCTCTC GACCGAGCCC
GCCGCGCTGG CCACGGGGCT CGTGGCCGCC TGCGCGGTCT GGGTCGCGTG GGCCTACGCC
ATCAGCCACG GGCGCGCGGA GAGGAGCGGC GAGGAGCACG GGTCTGCCAG GTGGGGCACC
CGCCGCGAGG GGCGCAGGTT CATGGACCTC AAGGACCCCC GGAACAACCT CATACTCACC
GAGCACTACG GCATGGCCAT GAGCAGGCCC GACCACGACA GGCGCTACGA GCGCAACCGA
AACGTGCTCG TCATCGGCGG CTCCGGGTCC GGCAAGACCC GCGGCTACGT GGAGCCCAAC
ATCATGCAGA TGAACGCGAG CTACCTCGTC ACCGACCCCA AGGGCGAGAC TCTGCCCAGG
ATGGGCCGGA TGCTCGAGGC CAACGGCTAC GAGGTCGCGT CGTTCAACAC CGTCGACTTC
TCGGCGTCGA TGCACTACAA CCCGCTCGCA TACATAAAGG ACGAGGCCGA CATCCTCGAG
TTCGTCACCT GCCTCATCGA GAACACCACC TGCGAGGGAC GCCAGGCGCA GGACCCGTTC
TGGGAGAACG CGGAGCGGCT GCTCTACGTG GCGCTCATCG GCTACCTCGT GTACCACTGC
CCGGCGCGGG ACCGGTCGCT GTCGGGCCTG GTGACGCTGC TGTCGCTCGC GAAGGCAAAG
GAGTCCGATG AGGACTTCAA GAGCCCGCTC GACCTGCTCT TCGAAGAGAT CGAGACGGGA
GTGCGGCTCG TGGCCGACGA CTCGGCCGGC GAGGCGGGCT TCGACCCCGC GAGGCGGGGG
TCCTTCTCCC CTAGCGGGGC GGGCGTGAGG CGCGTGAGGG TCGCGGATCC CGTCGACGTC
GACTCGGACT TCTGCCTGCT GCACTACAAG ATGTTCAAGG ACGCCGCCGG CAAGACCCTG
AAGTCAATCC TCGTGTCGTG CAACACGCGC ATGGAGCCCT TCGCCATCCC GCAGGTGCGC
GAGCTCGTCT CCTACGACGA GATGGCGCTC GACCGGCTCG GCGACCCCGG TGCGAAACGC
GCCGTCTTCG CCGTGATGTC GGACACCTCC AGCCTCTACT CGTTCCTGTT CGCCATCATG
CTCTGGCAGA CCATGAACAT GCTCTGCGAG CGGGCGCTCA AGGAGTACGG GGGCTCGCTT
CCGACGCCGG TGCACCTCGT GCTCGACGAG TTCGCCAACA TCGGCAAGCT CCCCGACGTG
GAGCGCATGG TGGCGGTCAT CCGCAGCCGC AACATCTCGA TGTCGGTGAT TCTGCAGTCC
ATGAGCCAGC TCAAGGCCCG CTACGAGGAC GACTCCGCGA CCATCGTCGA CTGCTGCGAC
ACGACGCTCT TCCTGGGAGG CAAGTCCACC GAGACAGTCA AGGAGATCTC CGAGACGGTC
GGCAAGGAGA CCGTGGGCAC CGTCACCTGG AGCGAGAGCC GCGGCGCCAT GCCCTCGTCC
ACCCGCAACT GGAACACCAT CGAGCGCGAC CTGGTGCAGG GCGCCGAGGT CGCCAAGCTG
CCGCGCGACG AGGCCATCGT CCTCATCACC GGCACCGACC CCCTCAAAGA CAAGAAGTAC
GACATCGCAT CGCACCCCAT GTGGCCGCAG GCGTACCCAG GGCATCCGGG CGCGCTCTTC
TCGGAGCCCT ACGACTTCGC GGCGCGCCTG CGGGAGATGC GCGAGGGACG TGAAGACGGC
GGCGGTGCCG CCTCGGACGC ATAG
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| Protein sequence | MSARPSGTVA ATVLSVAAFA AADAYAACLM SLPGNAAMNL MAAVEALPAY IASHGLSTEP
AALATGLVAA CAVWVAWAYA ISHGRAERSG EEHGSARWGT RREGRRFMDL KDPRNNLILT
EHYGMAMSRP DHDRRYERNR NVLVIGGSGS GKTRGYVEPN IMQMNASYLV TDPKGETLPR
MGRMLEANGY EVASFNTVDF SASMHYNPLA YIKDEADILE FVTCLIENTT CEGRQAQDPF
WENAERLLYV ALIGYLVYHC PARDRSLSGL VTLLSLAKAK ESDEDFKSPL DLLFEEIETG
VRLVADDSAG EAGFDPARRG SFSPSGAGVR RVRVADPVDV DSDFCLLHYK MFKDAAGKTL
KSILVSCNTR MEPFAIPQVR ELVSYDEMAL DRLGDPGAKR AVFAVMSDTS SLYSFLFAIM
LWQTMNMLCE RALKEYGGSL PTPVHLVLDE FANIGKLPDV ERMVAVIRSR NISMSVILQS
MSQLKARYED DSATIVDCCD TTLFLGGKST ETVKEISETV GKETVGTVTW SESRGAMPSS
TRNWNTIERD LVQGAEVAKL PRDEAIVLIT GTDPLKDKKY DIASHPMWPQ AYPGHPGALF
SEPYDFAARL REMREGREDG GGAASDA
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