Gene Shel_18310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_18310 
Symbol 
ID8395721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2059296 
End bp2060372 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content61% 
IMG OID644986584 
Producturoporphyrinogen-III decarboxylase 
Protein accessionYP_003144198 
Protein GI257064526 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGTGA GAAAAGATGA GATGACCTCG AATGAGCGTA TGGCGGCGTA CTTCGATGGG 
GAAGAGGTGG ACCGCCTGCC CGCCATGCCG ATGGTCGATT CCTTCGGCCC CAGGCTTGCC
GGATACGAGA TGCGTTACAA GCGTCTTTCG GCGGAGCACC AGGTGGAAGT GCAGAAGGCC
TGCTACGACC TGCTGGGATT GGACGGTCTG TCTATCGAGT ACGGTCTGCA CGGCATCGGC
CAGGCCTGCG GCACCGTCCT GAACGATCCG GCCGACAGGA CGCCATCCAT CGACAAGCAC
GTGCTTGAAT CCATCGAGCA GGTCGACCGA CTCGATCTGG ACTGCGTGCT GCGCAAGAAC
GACCCGTGGA TCGACATGTG CATGACGGCC TGCGAAATGC TGGTGGACCA GATGGGCGAT
GTGGTGGGGA CGTCGGCTAG TCTGACCGGT CCTTTGACGG CCGCAGCGAG CCTTCTTCCC
ATGCGCGACC TACTGGTGGC CACCCGCAAG AAACCCGAGC TTGCCCGCAA GCTCATCCGG
TTCTCGACCG ACGCTCTCAA GCTGGTGAGC GACCAGTTCG CAAGCCTGGG CGTGGACATC
TTCATCTGCG ACCCGGTGGC ATCGGGCGAC ATCATCAACG AGAAGACCTA TCGCGAATGG
GTGCTGCCCT ACACCCAGGA GCTGGCGCCT GTCATCCATA AGCACAACGT GGCCATGGGT
TACCACATCT GCGGCAACAC CAACAAGATC ACGGGAGCTA TGCTGGAATC GGGCTGCGAC
ATGCTGAGTG TGGACGCGAA GGTGCCGCTG ACCTTCGCGA AAGAGATGGG CGGCGACAAG
GTGCCGATCA TCGGCAACGT CGACCCCATG GACGTCATGA TGCTGGGCAC GCCCGACGAG
GTGCGCGAAA ACGTGCTGCG AAATATCGAG GATTGCGTCG ATTCGCCCTG CGGATACATC
GTCTCGACCG GGTGTGACCT TCCTGTCAAT ACACCTTTGG AGAACGTGGT GGCGTTCATG
GATGCCGTGC GCGAGTACGG TTCGGTCCGT ATCGGCCAGA AGGGAAGCGC TGTCTAA
 
Protein sequence
MQVRKDEMTS NERMAAYFDG EEVDRLPAMP MVDSFGPRLA GYEMRYKRLS AEHQVEVQKA 
CYDLLGLDGL SIEYGLHGIG QACGTVLNDP ADRTPSIDKH VLESIEQVDR LDLDCVLRKN
DPWIDMCMTA CEMLVDQMGD VVGTSASLTG PLTAAASLLP MRDLLVATRK KPELARKLIR
FSTDALKLVS DQFASLGVDI FICDPVASGD IINEKTYREW VLPYTQELAP VIHKHNVAMG
YHICGNTNKI TGAMLESGCD MLSVDAKVPL TFAKEMGGDK VPIIGNVDPM DVMMLGTPDE
VRENVLRNIE DCVDSPCGYI VSTGCDLPVN TPLENVVAFM DAVREYGSVR IGQKGSAV