Gene Shel_17480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_17480 
Symbol 
ID8395638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1976738 
End bp1977652 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content62% 
IMG OID644986502 
Productsugar kinase, ribokinase 
Protein accessionYP_003144116 
Protein GI257064444 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0524] Sugar kinases, ribokinase family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.402042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCCATA CGGTTGTGAT CGGCACGACG TTCGTGGATG TCAAAGGGGT TCCGAAGGGC 
GCATACGACC CGCAGGGCCG CAATGTGGGC GATGTCAAAA TCGTTCACGG CGGGGTGGGG
CGCAACGTTG CCGAGAACTT CGCGAACGTT GGCAAGCCGG TCTCCTTCGT GGGTACGATG
GAGGATTCCG CCTTCGGTCG GGATGTTCGG CGGCGTTTGC TCGAGCGCGG TGTGAATCTG
GACCATGCGC CGCAGGCTTC GGACAACGGC ATCGGCATGT GGCTGGTCAT CCTCGACGAG
AACGGCGACC TTGCCGGGTC CATATCCAAA ATGCCGGAGC TGGACCTTCT GGAAGAGCAC
CTTTCGCGCG AAATCGACAC CATCGCGGCC GGGGCCGACG CGATTGTTCT GGAGTTGGAC
CTGAACGAGC GCATCGCCGA GGTGGTCGTG GACGCGGCGA AAAGGCATGG CAAGCCGCTG
TACGCCATCG TGGGCAACAT GAGCGTCGTG CTCAGCCGAA AAGACCTGGT CAAGCAGACG
GATTGCTTCA TCTGCAACGT GATCGAAGCC GCCAAGTACT TCGGCTTGGG CGCGCTGGCG
GACTATTCGC CGACCCAGAT GCTGGAGTTC CTGCCCGATG CTGCTTCTCG GGAGGGCATT
GCCTCCATGG TCGTCACTAT GGGCGCCGAA GGTGCGGTCT ATTTCGACGG ACGCGCCGGC
AGCGCTGGCA TCTGCCCGCC GTATCCCGCC AAAATGGTAG ACAGCACCGG TGCCGGAGAC
GCGTTCTTCT CGGGAACGGT CATGAAGCTT GTCGAAGGGT GTGTGCTGGC GGATGCCGTG
GCTTTCGGTG CCCGCCTTGC ATCGGCGACC ATCGGAAGCG AAGAAGCCAC CTGTCCTGTC
GGCGGCGGTT TCTAA
 
Protein sequence
MGHTVVIGTT FVDVKGVPKG AYDPQGRNVG DVKIVHGGVG RNVAENFANV GKPVSFVGTM 
EDSAFGRDVR RRLLERGVNL DHAPQASDNG IGMWLVILDE NGDLAGSISK MPELDLLEEH
LSREIDTIAA GADAIVLELD LNERIAEVVV DAAKRHGKPL YAIVGNMSVV LSRKDLVKQT
DCFICNVIEA AKYFGLGALA DYSPTQMLEF LPDAASREGI ASMVVTMGAE GAVYFDGRAG
SAGICPPYPA KMVDSTGAGD AFFSGTVMKL VEGCVLADAV AFGARLASAT IGSEEATCPV
GGGF