Gene Shel_17320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_17320 
Symbol 
ID8395622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1955202 
End bp1957112 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content63% 
IMG OID644986486 
Producthypothetical protein 
Protein accessionYP_003144100 
Protein GI257064428 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3855] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.199854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACGA TTGACATGCA AACCCTTGAA CACTTGAGCG AAACGTATCC GACCGCGCAG 
GCCGCTCGCG CAGAGGCGGA AGCTAGCGCC CGGCAGCTGG CCGACCTCAA GGGCGCGGTG
GTTTTCGCAT CCGACGTGCA TGGCGAATAC AACGCGTTCG ACCACATCCT GCGTAGCGGC
TGCGGCTCCA TCCGCCAGAC GATCGACAGT CTGTTCGCCG ACGAGCTGAC CGAAGAGGAG
CGGGCCGAAC TGGCAACGCT CGTGTACTAT CCCCGCGAGA AGGCGGAGCT GCTCCTGTCC
CAGCCAGAAG ACCAGACAAC CTGGCTGGGC AAGGTGTTGC CGCAGCTGGC GGCTGTGCTG
CAAGCCGTTG CCGAAGGACG CCCCGAGGCG CTTCGTCGCG AGATGCCCGA AGGTGCAGCC
GACACGATCG GGGCCCTGCT TGCGGGCGAT GCTGAACCTG CTCTTAGGGC GGGCGACCCG
GCGGGTATCG TGGAGGCCGT GGGCACGTTG ATCCAGCGCC TGTCGATTTC GCATTTGCAT
ATGGTGGGCG ACGTGTACGA CCGCGGGCCG TCGCCGGAAC TCATCATGGA CATGATGATG
GGCTACCACT CCATCGACAT CCAGTGGGGC AACCACGACG TCCTGTGGAT GGGCGCCGCT
TTGGGCCAGC GGGGCTGCGT GGCCAACGTT GTGCGCATCT GCGCACGCTA CGGCAATTTC
CCCATTCTGG AGGATTCCTA CGGCATCAGC ATGAAACCCC TGGTGGACTT CGCGTTGGAA
ACCTACAAGG ACGACCCCTG CGTGGGCTTC GCGCCGAAGA TCAAGGGCGA TTTCACGCCC
GAGGAGCTGG CCCGTTGGTC GAAGATCCAG AAGGCCATCG CATACATCCA GTTCAAGGTG
GAGGCCAAGC TTATCGCCGA GAACCCGTCC TTCGGTCTGG ACGACCGCAA CCTGCTGCAC
CTTATCGACC GCGAGCGCGG CACGGTGGTG GTGGACGGTG TGGAATACGA GGTCCAGGAC
ATGGTGTTCC CGACGGTGGA CTGGGACGAC CCGTACCGCC TGTCGGATGA GGAATCGGCC
GTGATGGATT ACCTCGAGCA GGCCTTCATG AACTGCGAGA AGCTCCAGCG CCACATCCGT
TTCTTCCTGG ATGCGGGCAG CTTCTACAAA ATCTGCGGCG ACTTTCTGCT GTACCACGCG
TGCGTTCCGC TGAACGCCGA CGGCTCTCTG AAGGAAGTCA CCGTGCTCGG CGAAACGTAC
AAGGGCCGTT CGCTGTTCGA CGCCATGGAG CGCTACACCC GCCAAGCATT CGACGACCCT
GACCCTGCCA AGCGCAAGGT CGGCCGCGAC ATGATTTGGT ACATGTGGCT CGGCCAAGGC
TCGCCCCTGT TCGCGAAGAG CAAGATGGCC ACCTTCGAGA TTTACATGAT CGCCGACAAA
GCCGCCCGCA AGGAGGTCAA GAACCCGTAC TACTCGCTGC TCGAGGACGA GCAGGTGCTG
GCGGGCATCT TCGAGGACTT CGGCATGGAT CCGGCCGTCT CGCGCATCGT GAGCGGGCAT
GTGCCGGTGA AGGTGAAGGA CGGCGAAGAT CCCGTGAAAT GCGGCGGGAA GGCCATGATC
ATCGACGGCG GCTTCTCGCG TGCGTATCAG TCCGCTACGG GCATTGCCGG GTTTGCCCTG
GTCAACGATG CGAACGGGTT GCGTCTGGGC TATCTGGAAC CGCTGGAGTC GCAGCAGGCC
GCCATCGAGC GCAACCTGGA CATCGTGCCG AAATGGCGTA CGCTTGCCGA AAACGAATCC
CCGCTACACG TGGGCGATAC CGAATACGGC CTGGTACTGC GCGACAAGAT CGATGCACTG
ACTCGCTTGG CCGAAGCCTA CGAGGCGGGC GATATGCCCG AGCGCGCGTA A
 
Protein sequence
MTTIDMQTLE HLSETYPTAQ AARAEAEASA RQLADLKGAV VFASDVHGEY NAFDHILRSG 
CGSIRQTIDS LFADELTEEE RAELATLVYY PREKAELLLS QPEDQTTWLG KVLPQLAAVL
QAVAEGRPEA LRREMPEGAA DTIGALLAGD AEPALRAGDP AGIVEAVGTL IQRLSISHLH
MVGDVYDRGP SPELIMDMMM GYHSIDIQWG NHDVLWMGAA LGQRGCVANV VRICARYGNF
PILEDSYGIS MKPLVDFALE TYKDDPCVGF APKIKGDFTP EELARWSKIQ KAIAYIQFKV
EAKLIAENPS FGLDDRNLLH LIDRERGTVV VDGVEYEVQD MVFPTVDWDD PYRLSDEESA
VMDYLEQAFM NCEKLQRHIR FFLDAGSFYK ICGDFLLYHA CVPLNADGSL KEVTVLGETY
KGRSLFDAME RYTRQAFDDP DPAKRKVGRD MIWYMWLGQG SPLFAKSKMA TFEIYMIADK
AARKEVKNPY YSLLEDEQVL AGIFEDFGMD PAVSRIVSGH VPVKVKDGED PVKCGGKAMI
IDGGFSRAYQ SATGIAGFAL VNDANGLRLG YLEPLESQQA AIERNLDIVP KWRTLAENES
PLHVGDTEYG LVLRDKIDAL TRLAEAYEAG DMPERA