Gene Shel_16940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16940 
Symbol 
ID8395584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1904044 
End bp1905396 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content64% 
IMG OID644986448 
Product4Fe-4S protein 
Protein accessionYP_003144062 
Protein GI257064390 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGTGA TCAGCGAGAT GAACAGCCCG AAGCTCTCAG TGCACGCCAA CCGCTGCGTC 
TTTGTCAGGA ACCGCAATGC CGACTGCCTG CGCTGCGCCT CGGTGTGCAC CACCGGCGCC
ATTTCCAAAA GCGAAGCCGG CGTGACGGTG GACCCCGACA AATGCATTGG TTGCGGGACC
TGCGCCACCG CATGCCCGAG CTGCTGCCTG GAGGCCATGA ACCCTTCGGA CGAGACCATG
TTCTTCCAGA TGCGCCAGGG CCAAAAGGCC GGCGGCGGGC ATGTCGCCGT GGCCTGCAGA
AACGCCCGCA TGCTGTCGGG CGCCTCCAAG GACGACGAAG GCGTATGGAC GCTGCATGAC
GGCACGCCCG TCGTCTCGGT GGAATGCCTG GGTCGCGTCG ACGAGTCGGT GCTCGTGGAA
ACCGTCGCCC GTGGCGCTGT ACGCATCACC TTGATCGAAG GCTCATGTTC CACCTGCGAA
CACACCAAGG GGGGATCGTT CTGCAGCACC ATCCTGCAGG AGGCGAACAA CCTGCTCCGC
GCATTCGACT CGGATGCCGT ACTGGAGAAG ATCCCCGTGT CCCAAGTTGA CATGCGCCAC
CGCCCCTTCA CGCCCGAGGA GAAGGCGGCC GCCGCCCGTC CCGCCTACGA ATGGAAGGCA
GACGCCCCCG CTGCCGACCC GCGCCGCATC CTCAACGATG TGACCAAGGC CAGCGCCGAC
GTGGACACCA TCGCCGAGTA CGCCAAGCGC AACGCCGTCG CCTCGAAACG CGTGCAGCTG
GAGGAGCCGG CCCTGCGCCA CGTCCAGACC GACGGCACGC TGCCCCATTT CACACCGTCG
CGCAGGTTGC GTCTGTTCAA CAGCTTGAAG CACCTGGGCA TACCCACATG CGAAACAGTC
AAGACGCGTT TGTGGGGACA GGTGAACATC GACACCGACA TCTGCCGCTC GTGCCGCATG
TGCACGGTGT TCTGCCCCAC GGGCGCCATC AGCCGATTCG ACACGAAGGA CGACGCGTTC
GGCGTCGAAC ACCGAAGCGC CCTGTGCATG CAGTGCCGCC TGTGCGAGAC CATCTGCCCC
GAGCACGCTA TAACCGTGTC CGACACGGTC TCCCTCGACG AGTTCGTCAG CGGCGCCAAG
ATCCGCTTCG AGATGAATCC CATCGGATGG AGCCCTTCGA GCCCGAACGC CATCGGAACG
CGCTACGCAC GCTTCCTTAA GACGCCAAAC CTGCAGGACC CGCAGGCCAC GAACAAGCCT
GAAGACATAC GCGAGGCCCA GGCCTTTGCA CACAAGAAAG AGGCTGCCCG CGCCAAGGCG
AAGGCAGCCA GAGAGAAAAG ACAGAGCGAA TAG
 
Protein sequence
MYVISEMNSP KLSVHANRCV FVRNRNADCL RCASVCTTGA ISKSEAGVTV DPDKCIGCGT 
CATACPSCCL EAMNPSDETM FFQMRQGQKA GGGHVAVACR NARMLSGASK DDEGVWTLHD
GTPVVSVECL GRVDESVLVE TVARGAVRIT LIEGSCSTCE HTKGGSFCST ILQEANNLLR
AFDSDAVLEK IPVSQVDMRH RPFTPEEKAA AARPAYEWKA DAPAADPRRI LNDVTKASAD
VDTIAEYAKR NAVASKRVQL EEPALRHVQT DGTLPHFTPS RRLRLFNSLK HLGIPTCETV
KTRLWGQVNI DTDICRSCRM CTVFCPTGAI SRFDTKDDAF GVEHRSALCM QCRLCETICP
EHAITVSDTV SLDEFVSGAK IRFEMNPIGW SPSSPNAIGT RYARFLKTPN LQDPQATNKP
EDIREAQAFA HKKEAARAKA KAAREKRQSE