Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_16630 |
Symbol | |
ID | 8395553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1870845 |
End bp | 1872647 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644986417 |
Product | succinate dehydrogenase/fumarate reductase flavoprotein subunit |
Protein accession | YP_003144031 |
Protein GI | 257064359 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.770903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.816981 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCAAGA ACACCAAGAA CCTGTCCCGT CGCGGATTCC TGTCCGGCGC CGCCCTCGCA GGCGTAGCCG CGGCCGGCTT GGCCGCATGC TCGCCCAGCG CATCCGGCAC GGGCGAAAGC GCAGCCGCCG CCGACGGCGA AACCGCTGCA GCAGCAACCG GCGAAGGCAC CCTCGGATAC GACGGCACCG GCAACATGCC CTGGCTCGGC GAGATGCCCG TCATCGACGA TGCTTCCGTT GAGGAAGAGC TCGACGCCGA CGTTCTGGTC ATCGGTCTGG GCGCAGCCGG CGTGCCTGCA TGCCGCGCTG CTGCGGAAGC CGGCGCCAAG GTCGTGGCCT TCGAAGCCTC TTCCCATCTG AACAGCGTCG CCAGCGACAT GGCCATCCTC GGCGGCGAGA CCCAGGCCAT GTGGGGCCGC GGCGAAGGCT ACATCGACCG CTGGACCATC ATCAACGAGC ACATGAAGGA ATGCAGCCAC CACGGCAACT ACGCCATCAT GAACCGCTGG GCCGACGTGT CCGGCGCGGC TCTGGACTGG TTCGTGGCCG GCAGCCCCAG CCTGTACTTC GTGAAGGATG ACGCCTACGA GGAGATTCCC GAAGAGGGCC AGGCCAACTA CATGTTCCCC TACTGCTACC CCGTGCCCGA CACCTATGAC TGGACCAAAG AGGAGATGCC CTGCTATCCC ACGTCCGTCG GTTTCAGTAG CCTGGGTACC GTCATGAAGG ACAACCTGCA GATCGCCATC GACGCCGGCG CCGACATCCG CTACGACACC CGCGGCATCG AGCTGATCAC CGACGACTCC GGAGCCGTCA TCGGCGCATA CGGCCAGGCG AAGGGATCCG AGGGCTACAT CAAGGTGAAC GCGCCCGCCG TCATCCTGGC AACCGGCGAC TACCTGGCCA ACGAGGACAT GATGAAGTAC TTCGCCCCCG AGTGCATCGA GAACCAGATC CCCATTCTGA GCCTTGATAT GGACGCCGAC GGCAACTACA CCAACGTGGG CGACGGCCAC AAGATGGGCG CCTGGGTCGG CGGCGCCATC GAGCAGTGGC ACGCACCCAT CATCCACCAC ATGGGCGGCG GTGCAGGCCC CGACGGCCGC GGCGTCATCG GCAACAACGG CTACCTGTGG CTGAACCTGC GCGGCGAGCG CTTCATGAAC GAGGACCTGC CCGGCCAGCA GCTGGAGAAC CAGGTGGAGC TGCAGCCGCA GCGCAAGGCC TACCAGTTCT TCGATTCGAA GTGGCCCGAG CAGCTGGCCT ACTTCCCCAT GGCCCACGGC GTCGCCTGCA TCTACCGTGA GGAAGCCCTG CCCGATTACA CCGCATCCGG CCTGCGCATC AACGTCCGCA CCAAGGAGGA CATCGACGCA GCCATCGCCG ACGGCCGCTG CCTGACCGCA GACACCGTCG AGGACCTGCT CGCCCAGATC GAAGGCATGG ACGTGGAAAC CGCCAAGGCC TCCATCGAGC GCTACAACGA GCTGTGCAAC GCCGGCCAGG ACTCCGACTT CGGCAAGGCC AGCCAGCGCC TGTTCGCCCT GGAGAACGGC CCGTTCTACG CCGCCGAATG CGGCTGCGCC CTGACCCTGG GCAACCTGGG CGGCTTCGAA TCCGACGCCG ACTGCCACGT GTACAACACC GACCGCGAGC GCATCCCCGG CCTGTACGTG TGCGGCGCTC CGCAGGGCGG CCGCTTCAAC GTCCAGTATC CCATCTCGCT CAAGGGCCTG AGCTGCGGTA TGTGCATGGT CTTCGGCATG ATCGCAGGCC AGAACGCTGC CGCCTTGGCA TAA
|
Protein sequence | MSKNTKNLSR RGFLSGAALA GVAAAGLAAC SPSASGTGES AAAADGETAA AATGEGTLGY DGTGNMPWLG EMPVIDDASV EEELDADVLV IGLGAAGVPA CRAAAEAGAK VVAFEASSHL NSVASDMAIL GGETQAMWGR GEGYIDRWTI INEHMKECSH HGNYAIMNRW ADVSGAALDW FVAGSPSLYF VKDDAYEEIP EEGQANYMFP YCYPVPDTYD WTKEEMPCYP TSVGFSSLGT VMKDNLQIAI DAGADIRYDT RGIELITDDS GAVIGAYGQA KGSEGYIKVN APAVILATGD YLANEDMMKY FAPECIENQI PILSLDMDAD GNYTNVGDGH KMGAWVGGAI EQWHAPIIHH MGGGAGPDGR GVIGNNGYLW LNLRGERFMN EDLPGQQLEN QVELQPQRKA YQFFDSKWPE QLAYFPMAHG VACIYREEAL PDYTASGLRI NVRTKEDIDA AIADGRCLTA DTVEDLLAQI EGMDVETAKA SIERYNELCN AGQDSDFGKA SQRLFALENG PFYAAECGCA LTLGNLGGFE SDADCHVYNT DRERIPGLYV CGAPQGGRFN VQYPISLKGL SCGMCMVFGM IAGQNAAALA
|
| |