Gene Shel_16320 details

Gene Information

• Locus tag: Shel_16320
• ID: 8395522
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Slackia heliotrinireducens DSM 20476
• Kingdom: Bacteria
• Replicon accession: NC_013165
• Strand: +
• Start bp: 1832290
• End bp: 1833948
• Gene Length: 1659 bp
• Protein Length: 552 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644986386
• Product: L-serine dehydratase, iron-sulfur-dependent, alpha subunit/L-serine dehydratase, iron-sulfur-dependent, beta subunit
• Protein accession: YP_003144000
• Protein GI: 257064328
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1760] L-serine deaminase
• TIGRFAM ID: [TIGR00718] L-serine dehydratase, iron-sulfur-dependent, alpha subunit; [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit; [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.280056
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00195001
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

TTGGAGGCGA GCGTTTTGAA GGCACTGGGA ATCCGCGACA TCATCGGGCC CATTATGATC 
GGCCCCTCGA GCTCCCACAC GGCAGGCGCG CTGCGCATCG CGTCGATGTG CCGGCGGCTC 
CTTTCTGCCG AACCCGCTCA GGTCACGTTC ACCCTGTACG GAAGCTTCGC CCATACCAGC 
TTCGGCCACG GAACCGACCG CGCCTTGCTG GCGGGCCTTC TTGGCATGGC GGCCGACGAC 
ATCCGCATCC GCAACTCGTT TCAGATCGCC GAACAGGCGG GGCTGGCATT CGAATTCATT 
CCGAATGCCA CCGAACGTGT AAGCCACCCG AACACCGTCG ACATCCATGT GGTGGACGTA 
GACGGCACCG TCATGGACGT CCGCGGCGAA AGCATCGGCG GCGGAGCTGC GGTCATCACC 
CGCATCAACG GCGTGGACGT CAGGCTGGAC GGCGAATACC ACAGCCTGGT CATCAGCCAG 
AAAGACGCCA AGGGCGTGCT GGCCTACATC GCCAACTGCC TGAACGTCTT CGGCATCAAC 
ATCGCCACCA CCCGCATGTA CCGCAAACGC AAGGGCGACG TGGCGTTCAC CATCATGCAG 
ACCGACGACG AGATTCCCGA GGCGGCCCGC GAAGCAATCT GCTGCAACCC GCTGATCTTC 
GACGCGCGCA TCATCAAGAG CGACCTGATG TCCGACACCC GTGCACCCGT GCGCGCCGAC 
GAGGCCGATA CCATGCAGGG GTTCGGCGTC GGCATGGACC CGCATGACGC CGAGGTGCTT 
TTCGAACAGA TCGACTTCGC ATCGGCGGCC GACCTGCTGG CGTACTGCAA CGCCGAGAAC 
CTTGCGTTGA GCGAAGCCAT CTGCCGCCGC GAACGCTGCA TCCTGGCATC CAACGGCATC 
GCCGTGGACG ACACGAAACA TTACTTGCAG CACGCGCTTG CCGTCATGCG GGAATCCGTG 
ACGACGGCCT TGGACGACCC CTCCCCCTCC ATGGGCGGGC TTCTGGGCGG CGAGGCCCGC 
AAGCTGGCCG ATTTCGACGG AGGAATCGGC GACTCGCTGC TGTCGACGGC CACCCGCTAC 
GCCATGGCGG TGCTGGAGAC CAACGCTTCC ATGGGACGCA TCGTCGCCGC ACCTACCGCA 
GGGTCTTCCG GCGTCGTGCC TGCCGTGCTC TTCTCATGCC AGGACCGATA CGGATTCGAC 
GACGAACAGG TCCGCGAGGC GTTGGCCTGC GCGGCTGCCG TCGGTTACAT CATCACCCGA 
AACGCCACCG TGTCCGGAGC CGAAGGCGGC TGCCAGGCCG AGGTGGGAGC CGCATCCGCC 
ATGGCCGCAG CCGCCGCCGT CCAGCTGTTC GGCGGCACGC CCGAGCAATG TCTGAACGCC 
GCAGGCAACG CGATCGTCGG CCTGATGGGT TTGGTATGCG ACCCCGTAGC GGGCCTGGTG 
GAGGTCCCTT GTCAGAAACG CAACGCCACA GGCGCTGCAA ACGCCCTGGT GAGCGCTCAA 
ATCGCACTGG CAGGAATCGG CAACATGGTG GACTTCGACC AAACGGTCGA GGCCATGCAC 
CGCGTAGGCA AGTCCCTTCC CTTCGAACTG CGGGAAAGCG CATTGGGTGG CCTTGCGAAC 
ACGCCCGCGG CCTGCGCGTA CTGCGAGAGC AGACGGTAG 

 

Protein sequence

MEASVLKALG IRDIIGPIMI GPSSSHTAGA LRIASMCRRL LSAEPAQVTF TLYGSFAHTS 
FGHGTDRALL AGLLGMAADD IRIRNSFQIA EQAGLAFEFI PNATERVSHP NTVDIHVVDV 
DGTVMDVRGE SIGGGAAVIT RINGVDVRLD GEYHSLVISQ KDAKGVLAYI ANCLNVFGIN 
IATTRMYRKR KGDVAFTIMQ TDDEIPEAAR EAICCNPLIF DARIIKSDLM SDTRAPVRAD 
EADTMQGFGV GMDPHDAEVL FEQIDFASAA DLLAYCNAEN LALSEAICRR ERCILASNGI 
AVDDTKHYLQ HALAVMRESV TTALDDPSPS MGGLLGGEAR KLADFDGGIG DSLLSTATRY 
AMAVLETNAS MGRIVAAPTA GSSGVVPAVL FSCQDRYGFD DEQVREALAC AAAVGYIITR 
NATVSGAEGG CQAEVGAASA MAAAAAVQLF GGTPEQCLNA AGNAIVGLMG LVCDPVAGLV 
EVPCQKRNAT GAANALVSAQ IALAGIGNMV DFDQTVEAMH RVGKSLPFEL RESALGGLAN 
TPAACAYCES RR