Gene Shel_15380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_15380 
Symbol 
ID8395428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1759123 
End bp1759929 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content68% 
IMG OID644986292 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_003143906 
Protein GI257064234 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5632] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00636935 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0253427 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTACG AGATTAACAA GCACCACGGA AGCTACAACA TCCAGCCGCG CAGCGCGTCG 
GCGGTGAAAT ACATCGTCGT GCACTACACC GGCAGCGGCA CGAGCGCGGC GCCCGCCGCG
CTGAACAACT GCCAGTATTT CAGCGGCGGC GACCGCCAGG CGAGCGCCCA CTACTTCATC
GACGATGAAA CCATCTACGA GTACGCCGAT CCGTCGCGCC ACCTCACGTG GCACGTGGGG
GACGGCCGCG GCAAGTACGG CATCACCAAC ACCAACAGCA TCGGAATCGA GGTGTGCCAG
GACGGCGACC GCCCGTTCAC CGAGGCCGAG ACCAAGCGGC TGCAGTGGCT CGTGCGCAGG
CTCATGGACG AATACGGCGT GCCCGCCGAC CGCGTGGTGC GCCACTACGA CGCGAGCCGC
AAGCTGTGCC CCTACTACTA CACGCCGGGC GGAAGCGGCG GCGACGCGGC CTGGAAGGCG
CTGCACCGCC GCATCACGGC GGACGGCGCC TCGAAGGCCG GGTGGGTCAA GTCGGCCAAG
GGCTGGTGGT ACCGCCGGGC CGACGGCACC TGGCCCGCGT CGAAGTGGGA GCGCATCGGC
GGGGACTGGT ACTGCTTCGA CAAGGACGGC TACGCGATGG CGGATTGCTG GAAGAAGTCC
GGGGGTAAGT GGTACTGGCT GCGCGGCGAC TGCCGCATGG CGAAGTCCAC GGTCCTGCAC
AAGGACGGCA GGTGGTACGC CCTCGGGGCC GACGGCGCGA TGCTGCGGTC CGTCGCCACG
GACAAGTCGG GCGCTCTGAG GCTTTAG
 
Protein sequence
MSYEINKHHG SYNIQPRSAS AVKYIVVHYT GSGTSAAPAA LNNCQYFSGG DRQASAHYFI 
DDETIYEYAD PSRHLTWHVG DGRGKYGITN TNSIGIEVCQ DGDRPFTEAE TKRLQWLVRR
LMDEYGVPAD RVVRHYDASR KLCPYYYTPG GSGGDAAWKA LHRRITADGA SKAGWVKSAK
GWWYRRADGT WPASKWERIG GDWYCFDKDG YAMADCWKKS GGKWYWLRGD CRMAKSTVLH
KDGRWYALGA DGAMLRSVAT DKSGALRL