| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_14690 |
|---|
| Symbol | |
|---|
| ID | 8395359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 1685985 |
|---|
| End bp | 1686794 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644986223 |
|---|
| Product | ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| Protein accession | YP_003143838 |
|---|
| Protein GI | 257064166 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.544705 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000217507 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATA CCCTGCGTGA AATATGCCAA GAACATTGGC AGTGGCGCCA CCAGCTGATG
AACCTAGCCG TATTTGACTT GAAGAAGGAA GTCCGCGGCA CGGCGTTCCG TTGGGTTTGG
CTTATGATCA AACCGTTGAT GTACATCGGA GTTTTCTGGT TCGCTCTCGC CCTCGGTCTT
CGTGCCGGAC ACAGCGTCGG CGATTATCCG TATATCCTTT GGCTCAGCTG CGGCTTGATC
CCCTGGTTCT TCATGCAGTC CATGCTCAAC ACGGGTACGA GCATTTACCG TCGGTATCCG
TATCTGGTAA ACCGCATGCA TTTCCCTATG TCGATCATTT CGACGTTCTA CGCCTTGGCA
CAGTTCATCG TGTTCACCAT TTTGGTTGTG GGTATGATTG CGCTTTGCAT CCTTACCGGC
ACCAGCCTGG ATATACATGT GCTGCAGGTT ATTCCAAGTG CGCTGCTCAT GCTTGTGTAC
TTCATCATGC TGTCCATGCT CACATCGCCG CTTTGCGCCA TCAGCAAGGA CTTCCACCAG
CTCATCAAAG CGCTGACGCA GCCTCTGTTC TGGCTTTCGG GCATTATATA CAACGTGTCG
AACCTGCCCA TCGATTGGCT GCAGACGTTT CTGGCGTTCA ACCCCATCAC ATTTTTCTGC
ACCTGCCTGA GGGCTTCGCT GTGCGACAAG TATTGGATTT GGGAGAAGCC GGAAATCCTT
GTTCCTTTCG TCGTCGTGTT CGTCGCGACC ACGGTCATCA TGCTGTATTT CTACGGTAAG
CTGAGGAAGG ATGTGGCCGA TGTCCTCTAA
|
|---|
| Protein sequence | MLDTLREICQ EHWQWRHQLM NLAVFDLKKE VRGTAFRWVW LMIKPLMYIG VFWFALALGL
RAGHSVGDYP YILWLSCGLI PWFFMQSMLN TGTSIYRRYP YLVNRMHFPM SIISTFYALA
QFIVFTILVV GMIALCILTG TSLDIHVLQV IPSALLMLVY FIMLSMLTSP LCAISKDFHQ
LIKALTQPLF WLSGIIYNVS NLPIDWLQTF LAFNPITFFC TCLRASLCDK YWIWEKPEIL
VPFVVVFVAT TVIMLYFYGK LRKDVADVL
|
|---|
| |