| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_14620 |
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| Symbol | ispD |
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| ID | 8395352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1678702 |
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| End bp | 1679427 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644986216 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_003143831 |
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| Protein GI | 257064159 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.631494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000485971 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAACTACG CAGGCATTCT GGCGGGCGGA AAAGGCACGC GCATGGGCAT TACCGAACGC
CCTAAGCAGT TTCTGCGTCT GGGCGCCGAA GAGAAGCCCA TCATCATCTA TACCATCGAA
GCCTTTCTGA CCTGCAAGGA CATCGATCGC ATCATCATCG CCACGCCTCT GGCCTGGGTG
GAATACACCG AGGTCCTGGT ATACGAGAAC TTCGACGAAG AATCCTGCAG CCGCATTACC
GTCATCCAAG GCGGCAAAGA GCGCAGCGAC TCTCTGGACA ACATCTGTAC GTACATCGAA
GACACTTGGG GGCTGACCGA CGACGACATC CTGGTGAGCC ATGACGCCGT TCGCCCCTTC
GTCACCCAGC GCATTATCGA AGAAAACGTG CGCTTCGCCC GAGAAGTCGG GTGCGTCGAC
ACCGTAGTTC CTTCTACGGA CACCATCGTC GTCAGCGTCG AAGGCAAGAC CATCGACGAG
ATCCCGCCGC GCAGCCAGTT CTATCAGGGA CAGACGCCGC AGAGCTTCTC GATCAAGGAG
TACCTCGAGG CGTACAACGC GCTGACCGAT GAGCAGAAGG CCATCCTGAC CGACGCCTGC
AAGGTGTATC TGTTCAACAA CAAGCCCGTG CACCTGGTCA TGGGCGAATA CAGCAACATC
AAAATCACCA CGCCCTACGA TATCCATGTT GCCGAAAGCA TCTTAAGCGA GCGCGGTGCC
AAATAG
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| Protein sequence | MNYAGILAGG KGTRMGITER PKQFLRLGAE EKPIIIYTIE AFLTCKDIDR IIIATPLAWV
EYTEVLVYEN FDEESCSRIT VIQGGKERSD SLDNICTYIE DTWGLTDDDI LVSHDAVRPF
VTQRIIEENV RFAREVGCVD TVVPSTDTIV VSVEGKTIDE IPPRSQFYQG QTPQSFSIKE
YLEAYNALTD EQKAILTDAC KVYLFNNKPV HLVMGEYSNI KITTPYDIHV AESILSERGA
K
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