Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_14540 |
Symbol | |
ID | 8395344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 1666876 |
End bp | 1668684 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644986208 |
Product | LPS biosynthesis protein |
Protein accession | YP_003143823 |
Protein GI | 257064151 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3475] LPS biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.18006 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGACA TCAAAACGGC CAGAACGCAA AAAGAACTCG ACCTCATCGA AGACGTGATG GGGTCGAGCT TCTTAGAGCA CCAGTCGTAT GTCACGTACC GTGACACGCT TCTGCTCAAA GCGACGCGAG AGGCCAACCT TGAGCTGATG CGCAAGATCG ACGCGTTCTG CGAAGAGCAC GGCATCAAGT ACTTCGTGTA CGGCAAAACC CTTGCCGGCA TTGTTGCATA CCAGGACTTC CTGCCTGGCT ATTCCCGCAT CGACCTTGGA TTCCTCCGTC CTGAGATGGA TAAGTTCGAG GCGGCGTTCA ACGCGCTGAC CGATGAGCAG ATTGAAGAGC TGGGATTCAA GTACAACCCG TTCTTCACGG ATAAACGGTA CAAGAACATC CGCCGAATCT ATGCGCACAT CGACGCCATC GAATACACGT ACGTTGAAGA TGATTTGGAC ATCCTGTACG GTGACAACAC GTTGCCCATG GTCATCCGCG GCATGATCCA GGCCACGGTG TTCGATGAGG TGCCCGACGA CTTCTTCACC CGTAAGAAGT TTTACCGCCA GATGAAGCGC CGCAGCGTCA CGTTCAGGCG CACCATCGCT TGCCGCCACA TGAACGAGGC GAACTATGAA GACGGTTACG GCGCCATCAT CGACCGCCAT ATGCTGCGAT ACAAGATCAT GCCTTTGCGT CTGGCGTCCT GGCGCATCCA CCATCTGGCC AAGCGGTATC AGGGCCGCGG CATGAGCAAT GTGACCCGCA TGCTCAGCTG GCGTTCATAC ACGGTGCCGA AATCCGACAT CGGCGAAATC CAGCGCATGA ACCTTGCCGG CCTTATGGTG CGCTGCCCCG ACCGTCCTGA CATCTGGGGC AAGGAGCCCA TTCTGGAAAC CACCCCTGAA CTGCGCCGTC TGCAGAACGA CGCGAAGGAG ATCGTGGTCG AGATCGACCG CGTCTGCCAG GAGCTGGGCA TCCAGTACTT CGCCTGCGGC GGCACTATGC TGGGATATGT CCGCCACGGC GGCTTCATTC CCTGGGACGA CGACATCGAT ATCGGCATGC TGCGCGCCGA CTACGAGCGG TTCAAGGCCG AAGCCGGTGC AATTCTTGAC GGCGATCGCT TCTTCCTGCA GACTCGCGAG AGCGACCCGA ACATTCCGTA CCTGTTCTCG AAGGTTCGCA TGAACGATAC GGAATACATT ACTGACTACA ACAAGTTCCG CCCGTTCCAC AAGGGCATCT GCGTGGATGT GTTCCCGTTC GACTACATTC CGAATGATTT CGCCGAGCAG CGTTCGTTCA AGAGCAAGGT CCGCGGTAAG GCCAAGGCGC ATCATCGCGT GGTCAACCGT CAGTATCCGA AAGCACAGGC CGAAGAGATG CCCACGGACC GCAAGAATCT GGACTGGATG ATTGCCCAGA ACAACGGCAA GATTCTGGCC AAGCACTACT GGGGCATTTC GTTGGATGAG ACCCAGAAGG ACTACGACGA GACGGTTACC TGCTACAACG ATGTGGCCGA AGAAGAAGGT CTGGAATACG TGGCCAGTTT CGTTCCGTCT TACACGATGG CGAAGGTGGA AGATCTCTAT CCGGCCCAGC GTGTTGAATT CGACGGCATC GAAATCATGC TTCCGAAGAA CCCTGAGAAG TTCCTGCGCA TGCAATACGG TGACTACATG GTTCCGCCGT ATCCGCATCA ACGAGTCGGC CATGATTTGT TATTCTGGGC CGATGCGGAA GGCGTCGGAG GAGGCCGTGA GGCTGAAAAC GACTTCTTCT CAGGCGAGAA CAACGCTGGC GAAGAGTAA
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Protein sequence | MADIKTARTQ KELDLIEDVM GSSFLEHQSY VTYRDTLLLK ATREANLELM RKIDAFCEEH GIKYFVYGKT LAGIVAYQDF LPGYSRIDLG FLRPEMDKFE AAFNALTDEQ IEELGFKYNP FFTDKRYKNI RRIYAHIDAI EYTYVEDDLD ILYGDNTLPM VIRGMIQATV FDEVPDDFFT RKKFYRQMKR RSVTFRRTIA CRHMNEANYE DGYGAIIDRH MLRYKIMPLR LASWRIHHLA KRYQGRGMSN VTRMLSWRSY TVPKSDIGEI QRMNLAGLMV RCPDRPDIWG KEPILETTPE LRRLQNDAKE IVVEIDRVCQ ELGIQYFACG GTMLGYVRHG GFIPWDDDID IGMLRADYER FKAEAGAILD GDRFFLQTRE SDPNIPYLFS KVRMNDTEYI TDYNKFRPFH KGICVDVFPF DYIPNDFAEQ RSFKSKVRGK AKAHHRVVNR QYPKAQAEEM PTDRKNLDWM IAQNNGKILA KHYWGISLDE TQKDYDETVT CYNDVAEEEG LEYVASFVPS YTMAKVEDLY PAQRVEFDGI EIMLPKNPEK FLRMQYGDYM VPPYPHQRVG HDLLFWADAE GVGGGREAEN DFFSGENNAG EE
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