Gene Shel_14540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_14540 
Symbol 
ID8395344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1666876 
End bp1668684 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content56% 
IMG OID644986208 
ProductLPS biosynthesis protein 
Protein accessionYP_003143823 
Protein GI257064151 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3475] LPS biosynthesis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.18006 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGACA TCAAAACGGC CAGAACGCAA AAAGAACTCG ACCTCATCGA AGACGTGATG 
GGGTCGAGCT TCTTAGAGCA CCAGTCGTAT GTCACGTACC GTGACACGCT TCTGCTCAAA
GCGACGCGAG AGGCCAACCT TGAGCTGATG CGCAAGATCG ACGCGTTCTG CGAAGAGCAC
GGCATCAAGT ACTTCGTGTA CGGCAAAACC CTTGCCGGCA TTGTTGCATA CCAGGACTTC
CTGCCTGGCT ATTCCCGCAT CGACCTTGGA TTCCTCCGTC CTGAGATGGA TAAGTTCGAG
GCGGCGTTCA ACGCGCTGAC CGATGAGCAG ATTGAAGAGC TGGGATTCAA GTACAACCCG
TTCTTCACGG ATAAACGGTA CAAGAACATC CGCCGAATCT ATGCGCACAT CGACGCCATC
GAATACACGT ACGTTGAAGA TGATTTGGAC ATCCTGTACG GTGACAACAC GTTGCCCATG
GTCATCCGCG GCATGATCCA GGCCACGGTG TTCGATGAGG TGCCCGACGA CTTCTTCACC
CGTAAGAAGT TTTACCGCCA GATGAAGCGC CGCAGCGTCA CGTTCAGGCG CACCATCGCT
TGCCGCCACA TGAACGAGGC GAACTATGAA GACGGTTACG GCGCCATCAT CGACCGCCAT
ATGCTGCGAT ACAAGATCAT GCCTTTGCGT CTGGCGTCCT GGCGCATCCA CCATCTGGCC
AAGCGGTATC AGGGCCGCGG CATGAGCAAT GTGACCCGCA TGCTCAGCTG GCGTTCATAC
ACGGTGCCGA AATCCGACAT CGGCGAAATC CAGCGCATGA ACCTTGCCGG CCTTATGGTG
CGCTGCCCCG ACCGTCCTGA CATCTGGGGC AAGGAGCCCA TTCTGGAAAC CACCCCTGAA
CTGCGCCGTC TGCAGAACGA CGCGAAGGAG ATCGTGGTCG AGATCGACCG CGTCTGCCAG
GAGCTGGGCA TCCAGTACTT CGCCTGCGGC GGCACTATGC TGGGATATGT CCGCCACGGC
GGCTTCATTC CCTGGGACGA CGACATCGAT ATCGGCATGC TGCGCGCCGA CTACGAGCGG
TTCAAGGCCG AAGCCGGTGC AATTCTTGAC GGCGATCGCT TCTTCCTGCA GACTCGCGAG
AGCGACCCGA ACATTCCGTA CCTGTTCTCG AAGGTTCGCA TGAACGATAC GGAATACATT
ACTGACTACA ACAAGTTCCG CCCGTTCCAC AAGGGCATCT GCGTGGATGT GTTCCCGTTC
GACTACATTC CGAATGATTT CGCCGAGCAG CGTTCGTTCA AGAGCAAGGT CCGCGGTAAG
GCCAAGGCGC ATCATCGCGT GGTCAACCGT CAGTATCCGA AAGCACAGGC CGAAGAGATG
CCCACGGACC GCAAGAATCT GGACTGGATG ATTGCCCAGA ACAACGGCAA GATTCTGGCC
AAGCACTACT GGGGCATTTC GTTGGATGAG ACCCAGAAGG ACTACGACGA GACGGTTACC
TGCTACAACG ATGTGGCCGA AGAAGAAGGT CTGGAATACG TGGCCAGTTT CGTTCCGTCT
TACACGATGG CGAAGGTGGA AGATCTCTAT CCGGCCCAGC GTGTTGAATT CGACGGCATC
GAAATCATGC TTCCGAAGAA CCCTGAGAAG TTCCTGCGCA TGCAATACGG TGACTACATG
GTTCCGCCGT ATCCGCATCA ACGAGTCGGC CATGATTTGT TATTCTGGGC CGATGCGGAA
GGCGTCGGAG GAGGCCGTGA GGCTGAAAAC GACTTCTTCT CAGGCGAGAA CAACGCTGGC
GAAGAGTAA
 
Protein sequence
MADIKTARTQ KELDLIEDVM GSSFLEHQSY VTYRDTLLLK ATREANLELM RKIDAFCEEH 
GIKYFVYGKT LAGIVAYQDF LPGYSRIDLG FLRPEMDKFE AAFNALTDEQ IEELGFKYNP
FFTDKRYKNI RRIYAHIDAI EYTYVEDDLD ILYGDNTLPM VIRGMIQATV FDEVPDDFFT
RKKFYRQMKR RSVTFRRTIA CRHMNEANYE DGYGAIIDRH MLRYKIMPLR LASWRIHHLA
KRYQGRGMSN VTRMLSWRSY TVPKSDIGEI QRMNLAGLMV RCPDRPDIWG KEPILETTPE
LRRLQNDAKE IVVEIDRVCQ ELGIQYFACG GTMLGYVRHG GFIPWDDDID IGMLRADYER
FKAEAGAILD GDRFFLQTRE SDPNIPYLFS KVRMNDTEYI TDYNKFRPFH KGICVDVFPF
DYIPNDFAEQ RSFKSKVRGK AKAHHRVVNR QYPKAQAEEM PTDRKNLDWM IAQNNGKILA
KHYWGISLDE TQKDYDETVT CYNDVAEEEG LEYVASFVPS YTMAKVEDLY PAQRVEFDGI
EIMLPKNPEK FLRMQYGDYM VPPYPHQRVG HDLLFWADAE GVGGGREAEN DFFSGENNAG
EE