| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_14530 |
|---|
| Symbol | |
|---|
| ID | 8395343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 1665014 |
|---|
| End bp | 1666822 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644986207 |
|---|
| Product | glucan-binding domain-containing protein |
|---|
| Protein accession | YP_003143822 |
|---|
| Protein GI | 257064150 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5263] FOG: Glucan-binding domain (YG repeat) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.259034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAGCG TGAAATGCGA AGCTCGTTTT CTGCCCATCG CCATGATGGT TGCGGCAGTG
GTTTTGCTCG TCTTCCTTTC GGGCGGAGTG GCTTTTGCTG ACGATACGGT TGCGGCGGAT
GCAATGGATG CAGAAGCCGT CGGCCAAGAG CAACCTGCCG ACGATGCGTC CGATAGTGCC
GTTGCAGATG CCGATGTGCC GGTTGCGGAT GGTGATTCTG CGGTCGAGTC CGAAGCTACG
GGCGGTGAAG AGCCTTCCAT TGCTCCTGAT GCCGCAGAAC CTGATGAGGC CGAAGCGGAG
ACGCTTGCAG ACGGGGACGA CCAGGATACT GGCGAGACTC CCGAAGAACC TGCCATTGCA
GATGGCTGGC AAGAGGTTGA CGGTGCCAAA TACTACGGCC AGAACGGCGA GTATGTGCGT
GGATGGCTGA AGATCGATGG CATCTGGTAT TACTTCGACG AGAATACCGG TGCCATGACC
ACAGGCTGGC AGAAGGTGAA AAACGTCTGG TACTACATGG ATTCCGATGG AAAAATGACC
ACGGGCTGGC AGAAAGTCAA CGGAACCTGG TATTACATGG CGAAAAGCGG CGCCATGCAG
ACGGGATGGC TGAAGCTCGA AGATGGCACG TACTACATGA AGCCAGGCGG ATCCATGTCC
AAGGGCTGGC AGAAGATCGA CGATGCCTGG TACTACTTTG CCAACTCCGG CAGGATGCGT
ACCGGCTGGC TTACCCTTGA TGGCGAAAAG TACTACCTGA AGGATAACGG TGCGGCCGCC
GTCGGGCCGA CGACGGTCGA TGGCAAGACG TACCTTATGC GGGCCAATTG CAAGATGGTT
CAGAAATCCG GGTGGGCGTC CTACAACGGC AAGTACTATT ATCTTGCTTC GGACTTTACG
CTGGTCAAAG GCTGGAAGCA GATTGACGGC AAGTGGTATT ACCTCAAGTC CGGCGGCGAC
ATGGCCACTG GCTGGCTGAA GGGCACCAAC TGCTGGTACT ACATGCGCGA ATCGGGCAGC
ATGGCTACAG GATGGCAGAA AGTATCTGGC AAATGGTATT ACTTCAACAG CAACGGAAAA
ATGAAGACCG GCTGGCTGAA GGAAGACGGT TATTACTACA GGCTGGGCAC GAACGGTGCC
ATGCTGACCG GTTGGTACAA GGTTGATTCC ACCTGGTACT ACTCTTACAA GGGCGGCAAG
ATGGCCACGG ATACTTGGAT TGGCGACTAC TACGTCATGC CTAACGGTGC GTATTCGAGC
TACTCGACCA CGTACAAGGC CGGCTATCAA AACCCGTCGC AATACTACCA GGTCAGCAGC
AAAAACGTGT ATGTGGACGG CCACGGAACC AATTTCGATT ACGTCACGCC GAGCCGCATC
ACACGTAAGG CGACGCGTTC CGAATGTGTC GACGTGTTCA TCGCACGCGC GTACCAATAC
CTGGGCACGC CGTACATGTG GAACTACTCG CTGCAGCCCG GCGTGGGCGT CGACTGCATC
GGCCTGGTGT ACCAATGCGC CTATGCCTGC GGCATGGACC TGGGGGAGTT CAACCCCTAT
AACCACTACG CCACAGGTCC GAACGGTTGG CACAGCCACG ACGCCAACAA TTTCTGGAAC
TACGGCAGTG TGAAGCACGT GGCTCTGGCT GATAGGCAGC GCGGCGACAT CCTTTCCTGG
AACGGCCATG TAGGCATCTA CATCGGTAAC GACCAGATGA TCGAAGCGAC CACTGTCTCG
GGTAACGTTC GCATCGCAAG CATCTGGGCG CACGGCGTTC CGCGCGGCTG CATGCGCCTG
TTCGTCTAG
|
|---|
| Protein sequence | MHSVKCEARF LPIAMMVAAV VLLVFLSGGV AFADDTVAAD AMDAEAVGQE QPADDASDSA
VADADVPVAD GDSAVESEAT GGEEPSIAPD AAEPDEAEAE TLADGDDQDT GETPEEPAIA
DGWQEVDGAK YYGQNGEYVR GWLKIDGIWY YFDENTGAMT TGWQKVKNVW YYMDSDGKMT
TGWQKVNGTW YYMAKSGAMQ TGWLKLEDGT YYMKPGGSMS KGWQKIDDAW YYFANSGRMR
TGWLTLDGEK YYLKDNGAAA VGPTTVDGKT YLMRANCKMV QKSGWASYNG KYYYLASDFT
LVKGWKQIDG KWYYLKSGGD MATGWLKGTN CWYYMRESGS MATGWQKVSG KWYYFNSNGK
MKTGWLKEDG YYYRLGTNGA MLTGWYKVDS TWYYSYKGGK MATDTWIGDY YVMPNGAYSS
YSTTYKAGYQ NPSQYYQVSS KNVYVDGHGT NFDYVTPSRI TRKATRSECV DVFIARAYQY
LGTPYMWNYS LQPGVGVDCI GLVYQCAYAC GMDLGEFNPY NHYATGPNGW HSHDANNFWN
YGSVKHVALA DRQRGDILSW NGHVGIYIGN DQMIEATTVS GNVRIASIWA HGVPRGCMRL
FV
|
|---|
| |