Gene Shel_13520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_13520 
Symbol 
ID8395243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1546457 
End bp1547758 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content60% 
IMG OID644986107 
ProductDNA repair nucleotidyltransferase/DNA polymerase 
Protein accessionYP_003143724 
Protein GI257064052 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGATACAC ACGAACAAAT ATCCGTATTC GGTTTTGAAG GTGAATGGAA CGGCCCTGCC 
ATCCTTCTGG TTGACCTGGA CGCCTTTTTC GCATCGGTCG AACAGTTGGA CCATCCTGCA
TGGCGTGGCA AACCGGTCAT CGTCGGAGGC AATGCGGACA AGCACGGCGT GGTGTCCACG
GCCAGTTACG AGGCCCGCGT GTACGGTGTG CACAGCGCCA TGCCCGCATC GCAGGCGCGC
AGCCTGTGCC CTCATGCCAT CTGGACGCCC GGACATTTCG ACCGTTATCG TGAAATGTCC
CGTAAGGTTA TGGCGATCAT CCACGACGAG AGCCCTCACG TGCAGCAAGT CAGTATCGAC
GAGGCTTTTG TGGACGTGTC GCCGACGCGC GTAAACCGTG AAAGCCCGGT AAGCATCGCG
CAACGCATCC AGTCTCGGGT GGCGAAGCTC GGCATCACGT GCTCAATCGG CGTCGGGACC
AGCAAGACCA TTGCCAAAAT CGCCTCAGAC ATGGACAAGC CGCGGGGGCT TACGGTGGTA
TTCCCCGGTC GTGAGCTCGA CTTCCTCTCC CCTCTTCCCG TTCGCGCCAT GTCTGGCGTG
GGATCGCGGG CCGAAGAGTT GCTGAAGGCC CACGGCGTGG AGACCTTGGG GCAGATGGCA
AAAGCCCCTG AATCGCTGCT GCATTCAATC TACGGCAAGA ATGCGGACAT GATGCGCAAC
CGATGCCTGG GGCTTGACGC AACCGCGGTT GCACAGGACG ACACCGTGAA ATCCGTGTCC
AGCGAAACCA CCATGGCTGA CGACCTTGTC ACCTTCGACG ACATTTCAGC AGTGGCGGGT
TCGATGGCGG CCAAGACCTG CCGGCGCCTG CGTGCCAAGG GGCTGAAGGG CACAACGTTG
GCTCTGAAAA TCCGCTTTTC GGACCGATCC ACCCGAAGCG TGCAGCAGCA GCTGGAAGAG
CCCTCAGACA ATGAGCATGA GCTTATCCCG CTGCTCGACG CCATGATCGG GCACCTATGG
AAGCCTGGCA TGAAAGTTCG TCTTATCGGG GTCGCGGTCA CCGGTTTCGA CGCCGATGAC
CTGGTGCAGG ATTCCTTGTT CGACGCATCC GAGTACGACG ATGCGCCTCC GGAGCCACCT
TCGCGCCATG TCATGTCCAA GGAGCAAGGC GAGCACCTCG CGTCGGCGAC CGACCTGGTC
AAGAACCGGT TCGGTGAAGG CGCCCTGGTG TTCGGCCGCG ATTTGAAGAT GCGTTCCAAT
ACCACCGGCA CAGCAGCTAA GAACCCCGAG GATTACCGGT AG
 
Protein sequence
MDTHEQISVF GFEGEWNGPA ILLVDLDAFF ASVEQLDHPA WRGKPVIVGG NADKHGVVST 
ASYEARVYGV HSAMPASQAR SLCPHAIWTP GHFDRYREMS RKVMAIIHDE SPHVQQVSID
EAFVDVSPTR VNRESPVSIA QRIQSRVAKL GITCSIGVGT SKTIAKIASD MDKPRGLTVV
FPGRELDFLS PLPVRAMSGV GSRAEELLKA HGVETLGQMA KAPESLLHSI YGKNADMMRN
RCLGLDATAV AQDDTVKSVS SETTMADDLV TFDDISAVAG SMAAKTCRRL RAKGLKGTTL
ALKIRFSDRS TRSVQQQLEE PSDNEHELIP LLDAMIGHLW KPGMKVRLIG VAVTGFDADD
LVQDSLFDAS EYDDAPPEPP SRHVMSKEQG EHLASATDLV KNRFGEGALV FGRDLKMRSN
TTGTAAKNPE DYR