Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_13280 |
Symbol | |
ID | 8395219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 1517741 |
End bp | 1519681 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644986084 |
Product | PTS system D-fructose-specific IIA component (F1P-forming)/PTS system D-fructose-specific IIB component (F1P-forming)/PTS system D-fructose-specific IIC component (F1P-forming) |
Protein accession | YP_003143701 |
Protein GI | 257064029 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component |
TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component [TIGR00848] PTS system, fructose subfamily, IIA component [TIGR01427] PTS system, fructose subfamily, IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.839336 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATTG TCGACCTGCT GAAAGAAGGT AGCATTAAAA TCGGCGCGAC CGCGGCCGAT AAGCCTGATG CTATCGAGCA GTTGATCGCC CTGCATGAAA AGGCAGGAAA CCTCAACGAC GTGGAGGAAT ACCGCAAGGC AATCCTCGCA CGCGAGGCCG GCGGTACCAC CGCCATCGGC GAGGGCATGG CAATCCCCCA CGCCAAGACC GATGCTGTGG CGCAGCCTGC GCTTGCCGCG ATGACCGTGC CCGACGGCGT CGACTACGAG GCGCCCGACG GAAAGCCGTC GAACCTCCTG TTCATGATCG CCGCCCCCTC CGATGGCGAC GTTCACTTGG AGGTCCTCTC ACGCCTGATG ACCATGCTCA TGGATATGGA CTTCCGCAGC AAGCTTCTGG GCGCCTCCAC GCCTGCCGAG TTCCTGCAGA TCATCGATGC CAAGGAAATC GAGAAGTTCG GCGAGCCCGA GCCTGCAGCT GAAGCCACCG CTCCTGCTGC TGCAGCCGTT GCAACTGCTG AGCCCGAAGG CTACCGCGTC CTGGCGGTTA CCGCCTGCCC CACCGGCATC GCGCATACCT ACATGGCGGC CGAAGCCTTG GCACAGGAGG CCGAAAAGAT GGGTGTGCCC ATCAAAGTCG AGACCAACGG CTCCGGCGGT GCGAAGAACA TCCTGACGGC CGATGAGATC GCCGCTGCCG AAGGCATCAT CGTGGCTGCC GACAAGAACG TCGAAATGGC CCGCTTCGAC GGCAAACCAG TCGTGATCAC CAAGGTTGCC GACGGCATCA ACAAGCCTAA GGAGCTCATC AACCGCGCCC TTGACGGGTC GGCTCCTCTG TACCACCATA CCGGTGCCGT TGATTCCGCA GCCGATTCCG CCGAAGGCGA AAGCATCGGC CGCCAGATCT ACAAACACCT GATGGAGGGC GTCTCCCACA TGCTGCCCTT CGTCGTCGCA GGCGGTATCT TCATCGCCCT GGCGTTTTTG ATCGACACCC TGCTGGGCGC TCCTCAGGAC GGCAACTTCG GCAGCAACAC GCCGGTCGCA GCCTGGTTCA AGGGCATCGG CGGCGTCAGC TTCGGTTTCA TGCTGCCCAT CCTCGCAGGC TACATCGGCC GCTCCATCGC CGACCGCCCC GGCCTTCTGG TCGGCTTCGT CGGCGGCTCC ATGGCAGCTG CGGGCTGCAC CTTCGCAGAC CCCGCCGGCC AGGCCGTTTC CGCAGGCTTC TTGGGCGCCC TGCTCGCCGG CTTCGCGGGC GGCTACTTCA TGCTCTGGTT CGAGAAGGTG TGTGAGAACA TCCCGCAGGC GCTTGACGGC ATGAAGCCCA TGCTCATCTA TCCTCTGGTC GGCCTCGCCT TCATCGGCAT CTTCATGTGC GCCGTCAACC CCATCATGAT CGCCATCAAC GCCGGCATCA GCTCATTCCT GACCAGCCTC GGCAGCGCCA AGATTCTGCT CGGCATCCTG CTGGGCGGCA TGATGGCCAT CGACATGGGC GGCCCCATCA ACAAGGCGGC TTACCTGTTC GGCCTGGCAG CCATCGAATC CGGCAACTAC GACATGATGG CAGCCGTCAT GATCGGCGGC ATGGTTCCGC CGCTGGCTAT CGCTCTGGCC TGCACCTTCT TCAAGGATCG CTGGACCGAG ACCGAGCTTA AGAGCGCTCC TGTCAACTAC ATCATGGGCC TTTCCTTCAT CACCGAAGGC GCCATCCCCT ACGCCGCAGC CGACCCGCTG CGCGTCATCC CCGCATGCGT CGTAGGCTCC GCCGTCGCAG GCGCCATCTC CATGGCCTTC GGCTGCACGC TCATGGCTCC CCATGGCGGC ATCTTCGTAT TCGCCGTCGT CGGCAACTGG CCCATGTACC TGGTGGCCCT GGCCATCGGC GCCGTGGTCG GCGCCCTCAT GCTGCGCGTC CTGAAGAAGA AGGTCGCATA A
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Protein sequence | MRIVDLLKEG SIKIGATAAD KPDAIEQLIA LHEKAGNLND VEEYRKAILA REAGGTTAIG EGMAIPHAKT DAVAQPALAA MTVPDGVDYE APDGKPSNLL FMIAAPSDGD VHLEVLSRLM TMLMDMDFRS KLLGASTPAE FLQIIDAKEI EKFGEPEPAA EATAPAAAAV ATAEPEGYRV LAVTACPTGI AHTYMAAEAL AQEAEKMGVP IKVETNGSGG AKNILTADEI AAAEGIIVAA DKNVEMARFD GKPVVITKVA DGINKPKELI NRALDGSAPL YHHTGAVDSA ADSAEGESIG RQIYKHLMEG VSHMLPFVVA GGIFIALAFL IDTLLGAPQD GNFGSNTPVA AWFKGIGGVS FGFMLPILAG YIGRSIADRP GLLVGFVGGS MAAAGCTFAD PAGQAVSAGF LGALLAGFAG GYFMLWFEKV CENIPQALDG MKPMLIYPLV GLAFIGIFMC AVNPIMIAIN AGISSFLTSL GSAKILLGIL LGGMMAIDMG GPINKAAYLF GLAAIESGNY DMMAAVMIGG MVPPLAIALA CTFFKDRWTE TELKSAPVNY IMGLSFITEG AIPYAAADPL RVIPACVVGS AVAGAISMAF GCTLMAPHGG IFVFAVVGNW PMYLVALAIG AVVGALMLRV LKKKVA
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