Gene Shel_13200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_13200 
Symbol 
ID8395211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1508136 
End bp1508852 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content59% 
IMG OID644986076 
Productpredicted branched-chain amino acid permease (azaleucine resistance) 
Protein accessionYP_003143693 
Protein GI257064021 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) 
TIGRFAM ID[TIGR00346] 4-azaleucine resistance probable transporter AzlC 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.754483 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAGAGG TAAAAGAAGC ATTCAAGGCG GCGTGGCCCA TCATGGTGGG CTATATCGTG 
TTGGGCCTGC CCTGCGGCAT ACTGTGCGCC GCAGCGGGCA TGGACGTCTG GATGGTTGCG
CTCATGGGTG CACTGTTCTA TTCCGGCGCA GGTCAATATA TGATTCCGAA CATGTGGATG
GCCGGCAACC CGATAAGCGC CATCGTGCTT TCGGTCACGT TGGTGAACAC GCGTCAGATG
CTGTACGGCG CATCGCTGTC GCAGTTCTGC GGGACGGCCG GCAAATTCCT CACCTTCAAT
TTCGGGGCGT CGGTCACCGA CGAGAGCTTC GGCGTGAACC TGGCCCGTTT CATGAACGGC
AACTGGACGG TGCGCAAGGC TCTGCTGGTC AACATCATGT CGCAGTCCAT GTGGTTCTCT
TCAAATGTGG TCGGGTGCAT CGTCGGCACG GCGATCTCCG TTCCTGCGGC TTTGGCCTCG
TTCGCCATGA CGTCTCTGTT CATCTGTCTG CTGTGCATGC AGAAGCTGAG CGTGGAAAAC
GGCGTGGCTG TCGTCGGATC CATCTTGGGC GTGATCGTGT GCAAGCTCGC AGGGCTTTCG
GGTCCGGCCA TTCTGATCGG CGCGCTTGTG GGCGTGTTCT CGGCGCTGGC GTTTTCGCTG
CGTCGCACGG CAAAAGGAAA ACCAAGCGGC GCCACCGACA TCAAGGTGGT GAGCTGA
 
Protein sequence
MEEVKEAFKA AWPIMVGYIV LGLPCGILCA AAGMDVWMVA LMGALFYSGA GQYMIPNMWM 
AGNPISAIVL SVTLVNTRQM LYGASLSQFC GTAGKFLTFN FGASVTDESF GVNLARFMNG
NWTVRKALLV NIMSQSMWFS SNVVGCIVGT AISVPAALAS FAMTSLFICL LCMQKLSVEN
GVAVVGSILG VIVCKLAGLS GPAILIGALV GVFSALAFSL RRTAKGKPSG ATDIKVVS