Gene Shel_12550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_12550 
Symbol 
ID8395146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1442760 
End bp1444202 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content60% 
IMG OID644986011 
ProductNa+/H+ antiporter 
Protein accessionYP_003143631 
Protein GI257063959 
COG category[C] Energy production and conversion 
COG ID[COG1757] Na+/H+ antiporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.507606 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTTG GCGCTTTGTC GGTGTTGCCT GTACTCATCG CCATTATCGG CTCCCTTATT 
ACGCGACGTC CATTCGAATG TCTGCTGATG GGTTCGCTCA TCGGGTGCAT CATCATGTAC
GGCGGCGGCT TTCTGCCCGA GTGGACGAAC ATGCTGCAGA CCACCATTGC CGACAACGTT
TGGATCATTG CAGTGTGCGG CCTGTTCGGA AGCTTGATTG CGCTGCTCAC GGCCGCGCGC
GGGACCGAAG GCTTCTCGGC GTGGGCAACG AAGTTCTGCA AGACCCGCCG CACCACCCGC
GTTGTCACGT TCATCCTGGG CGTGGTCATC TTCGTGGACG ACTATCTGAA CATGCTCACG
GTTGGCAACT GCATGCGTCC CGTGAACGAC AAGCTGAAGA TGCCGCGCGA ATCGCTGGCG
TTCATCACCG GCGCAACCGG CACCCCAGTG TGCATGCTTC TGCCGTTCTC CACGTGGGCA
GCGTTCTACA TCGCCCTGTT CCAACAGCAG GCCGAGGTGC AGGCCATGAA CTTTAGCAGC
AGCATCGACC TGTTCATGCA CTTCATTCCC TATAACTTCT TCTCCATCAC CATGGTTCTC
ATCACCTTCC TGTTCGCGCT GGGAATCATC CCTCCCATCG GGCCCATGAA GAAGGCCTAC
AAGCGCGTCG AGGACGGCGG AACGCCGTGG TGCGAGAAGT CGGCGGAAAT CAACCAGGAG
GACGCCGAGG CTTTGGGCAT CGCCGCAAGG CCGACCATGG CCGAGTCCGT GGAGAAAGCC
GAGGCTGAGT TGGAAGCTGC AGCTCAGGCG CCTGCGGACA GCCACGGGGA GGGCAAGCTC
ATCGACTTCG CGATTCCCAT GCTGGCGCTG ATCGTCGTTA CGTTCGTGCA GGACATTCTG
GTCGGTGTCG TGGTGGCTTT GGCCGTGTGC CTGGTGCAGT ACCTCATCCG CAAGAAGATG
ACTATCGCCG AGTGGACCGA GAAACTCTAC GAAGGCTTCG CGGACATGAT CCCCACGCTC
ATCTGTCTTA TGGCGGCGTT CATGGTGGCT GGCACGTCGG GCGCTATGGG CCTCACGCAG
TGGGTCATCG ACGTTGCCGC CGGGTTCCCG CTGCCTGCGC TGTTCCCAGC CATCGTCTTC
GTTGCGGTGG GCTTCATCAC CTTCGCAACC GGGTCGTTCT GGGGCACGTC CACCATCGTC
ACGCCGATTC TTCTGCCGCT GGCTGCGGCC ATGAGCGCAC CGATGATGCT GACCATGGGC
GCCATCTTGT GCGGATGCAC CATGGGCACG CAGGTATGCT TCTTCTCCGA CGGCAACATG
CTCATCGCCA CTTCGGTAAA GAACGACCTC ATGGAAAACT ACTTTGCCAC CTTGCCGTAC
CTGGGCATGG CCATCGGGCT TACGCTGGTG TGTCTTATCA TAGGCGGCTT CGTGATGGCG
TAA
 
Protein sequence
MELGALSVLP VLIAIIGSLI TRRPFECLLM GSLIGCIIMY GGGFLPEWTN MLQTTIADNV 
WIIAVCGLFG SLIALLTAAR GTEGFSAWAT KFCKTRRTTR VVTFILGVVI FVDDYLNMLT
VGNCMRPVND KLKMPRESLA FITGATGTPV CMLLPFSTWA AFYIALFQQQ AEVQAMNFSS
SIDLFMHFIP YNFFSITMVL ITFLFALGII PPIGPMKKAY KRVEDGGTPW CEKSAEINQE
DAEALGIAAR PTMAESVEKA EAELEAAAQA PADSHGEGKL IDFAIPMLAL IVVTFVQDIL
VGVVVALAVC LVQYLIRKKM TIAEWTEKLY EGFADMIPTL ICLMAAFMVA GTSGAMGLTQ
WVIDVAAGFP LPALFPAIVF VAVGFITFAT GSFWGTSTIV TPILLPLAAA MSAPMMLTMG
AILCGCTMGT QVCFFSDGNM LIATSVKNDL MENYFATLPY LGMAIGLTLV CLIIGGFVMA