Gene Shel_11480 details

Gene Information

• Locus tag: Shel_11480
• ID: 8395039
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Slackia heliotrinireducens DSM 20476
• Kingdom: Bacteria
• Replicon accession: NC_013165
• Strand: +
• Start bp: 1307411
• End bp: 1313092
• Gene Length: 5682 bp
• Protein Length: 1893 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644985906
• Product: conserved repeat protein
• Protein accession: YP_003143532
• Protein GI: 257063860
• TIGRFAM ID: [TIGR02543] Listeria/Bacterioides repeat

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTGGAAA AGTCATTCGT CCACATAAGT CGAGACACGC GGCAGTTGGC AAGCAAAGCG 
CTTGCTATCT TGCTGACCAT CTCGCTTAGC ATGATGACAT GGAATGCAGC GTCTATTAGC 
ACGGCGTTCG CAGGTGAGAA TGACGAAAGT CTCACCGTGA CGGACGACAC GTTGCTCGTC 
GATGGCGACG ACACGCAATC CGATGGGGAG GAGGTAACCA CCACACCGGA GAGCGAACCT 
CCAGCTGAGT CTGAGTCCGC GGCAGATCCC GAGTCCGCGG CCGAAGAGCC GGAAGCATCT 
GAGCCCGAAG CTCCCGCGGT TGACGAAGAT GCTGAAGCTG ACAGCGAGGC CGCCCAGCCT 
GAAGCTGCCG CCGACGAAGA GGCCGAGGAA ACCGCCGGAA CACTTAATGA TAGTTATGAC 
GGCGTTGCGG TCACGGTCAG CGATCCCAAC GGGACGCTGC CAGCAGACAC CGAGCTTGTG 
CTTGGTCCGA GCAGCGTGAC CAAGGAAGAC GCGCAAGCTG CTTTCGAGGA TGAGATCGTC 
GACTTCAAGG CAGTCGACAT TTCGTTCGTT GATAAGGACG GCAAGCCCGT TAAGCCCGCA 
GAAAACGTGA AGGTTACGCT GTCCGGTGCA ACCGTCGCCA GTGGCCAGAC CCTGCACGTG 
CTGCATGGTA CTGAACCCAT CAGCGCCACG ATCGACGGCG GCAGCGCCAC GTTCGAAACC 
AAAGACTTCT CTCCCTACGC ACTTGTTGTG ACTTCCCCCG TTAACGATAA GGCAAAGCTG 
GCCGCCACCC GCGACGCGAA GGCCGGCGAA GATGAAGCGA CTGAAGAAGG CGGCGAAGAG 
GCTGCACCCG AGACTTGGAC GGTGACGTTC TACGACAGGA ACGCCAACGT GGTTAATGCC 
ATCGAGGTCG TGAAGGGCGA GGCGATCGGC GACCTGCCCG ATGTTCCTTA CTACGAAGAC 
AACACTGGCG TGTGGTACGT TGGCTCTTAT GACAATTACG GCACCCCCAC ATATGGAGAA 
GGTCCGATCA GCTCCACTTA CATTCCTACT GAGAATACGT CTATTATTCC CAAGTACGAG 
CTGATTAACT ACACTGTCAC CTTCTATACG GATGAAACCA AATCCAAAGT CGTAGATACC 
AGGACGGTCA ACGCCGACTC TAATTACGGC GTGAATGACA TGCCTACTGT CCCCACAAAG 
ACCGGCTACA GCAGTAAGTG GGTCTACAGC GGTGGCGACT TCGACAACAC CGTAGCTGTT 
TCTGGTGACA CCGACGTCTG GGCTGACTAC ACCCAGAACA CCTTCACCGT CACCTATATG 
GTCGAGAGTG AGCCCTATCA GACCGATACC TATTACTACG GTGACGTCAT CACCTCCGAA 
GACCTTCCTT CGGATCCCGC AATCGAAGGC AAGCAGTTCA TTGGCTGGCG CCTCAACGAT 
GCTGAGTTTA CCGGCGGCGA GGTCAAGTCC AATTTGACGG TGACTGCTGA GTTTGAGAGT 
GAATACAAGG TGTCCTTCAC TGTTGAAGAC ACCGGCGAGG TTCTTTCCCA GTACTACCGC 
AACGACGGCG AAGCTATCGG TACTATGCCG CAGAATCCGT TCGTTGCTGG CAAAGTATTC 
GAGAAGTGGG TTGATTCGGA GACTGGCGAA GAGGTTACTG CAGCCACCGT CGTCAACGGC 
GATATGACCG TTGTCGCGCA GTTCCGTACC ATTGACATCT ATAACATCAA GGCTGAGTAC 
TACTACCTGA ACGACCGTGG TGAAGAGGTC ATCTTCAACA CCGACCTTAT TCAGACCGAC 
AAGCTTCCGT ATACCATCAC GGCTCCGGCA TCTACACAGA CTGACAGCAC CGAGGTTTCA 
GGTGGCCCGG TTTACTATGC GACCAACCAG GTCGTTGAAG TCGCTGCAGA TGACTTTGAC 
GGCGATACCG CCACTGTGCG CATCGAGTAT GTCGAGCACA CCGCCGAGTA CGACTTCGTG 
TACATGCTCA AGAACCTTGA TGGCAACGGC TATACCGAGA TTGATAGGAC CGAGGACGTC 
AAGGGCGTTC TTCACTCTAC GGTGACCCCG ACTGTCAAGA GCTACGATTA TGCGGCATTC 
GAGAGTGCCG AAACCGCGGA GATTACCCAG GCCACTGGCC AGGAAGTGCA TGTCTACTAC 
ACCCGCAAGA ACTTCCCGGT GTCTTACGAC TCTACTGGCG GTAGCTACGT TGCTGGCGCG 
ACTGTTCCAT ATGGCACCGA GTACACCGTC TCTTCGGCTG ATCCCACTCG CGACGGCTAC 
ACCTTCGAAG GCTGGTACTT GGACGAAGCC TGCACTAAGG CTGCGGGTTC TACGGTAACC 
GTGAACGGCG AGACCACGCT CTATGCCAAC TGGGAGGGCG ACGAGGTCGA TTACACAATC 
GTGTACATGT TCGAAAAGTA CAACGACACG GGTACCCAGT CCTCTTACGT GTATGACAAC 
TCAAGGACGG GCACCGGAAC TGTTGGTACA ACGGTTCAGG CGTCTTCTGC TCCGTCTGTT 
ACTCGTACTG GTTGGGAGGT CGACACTACA AAGAATGCCT CTTCCAGCGT GGTCATCGCT 
GCTGACGGCA GCTCGGTCTT GTACGTGTAC TACAAGCTGA CCGAGTACAC GATGACGTTT 
GACAGGAACC ACCAGAGCAG GGTGAGCGAC TACATCATCA GGCCCAATGG CACGACGACC 
ACCAACACCT ACAGCTTTAA TGTGAAGCTC GGCCAGGACA TCTCGAGCCT CTGGCCCTCT 
GCCGGGAGCA ACTATTACTC GTTCATGGGC TGGCAGAAGA ACGGCCAGGG CACGAGGTAC 
GTCACCAAGC AGCTCATCAT GAACACGGAC CTGCTGCCGT CGAGTGGCAA AACGCAGAAC 
TGGAAGGCAA GTTGGGGAAA CGCGTATACG TTCACCGTCA ACTACTACCT CCAGAACGCG 
GACGATGACG GCTACACCCG CTCCGAGACG TACAGCCAGA CCTACAACGC GGACTCCTAC 
GGCATCACGC CTAAGGTCAT CAGCGGCTAC ACCTTCGACC ACGGCAACAA CGAAGACTAT 
ACATTCACGT ACAACCTCTA CTACAACCGC AACACGTACA CCATCGACTA CTACTACGGC 
TCCACCAGAC TCGACACCAT CAGCAACGTG AAGTTCGACG CCAACATCAA CAAGGCGCCC 
TACATTTGGA CCCCCACGGC AGAGCAGTGC GGCGTGGACT CCGACTACAC CTTCGCTGGC 
TGGTACGCCG ACTCTGGTCT CACCACGCCG TACAACTTCT CGACCATGCC CGCGTCCAAC 
CTGGTGCTTT ATGCCAAGTG GACTCCGCCC ACCTTCGACG TCACGTTTGT TGATGGCGAG 
GACGCCTCAA CGGTCTACAG CACTGTCGAG GACGTTGCAA AGTACAGCAT GGTTTCCGCT 
CCCTCCGAGA CTCCGTCCAA GGACGGCTAT GTCTTCGACG GTTGGTATAC GACCGCAGAT 
GGTAGTGAGC TCTTCCAGTG GACGACGCAA ATCACCGAAA ACACGACCAT CTATGCGCAC 
TGGACGCCAA AGACGCTGTC CTACACCGTC AAGTATGTGG ATCAGGCTGG AAACGACGTT 
GCCTCTCCGA AGACCATCAC CAACCCGACC TTTACTGTTG GTCAGGAGAT TACTGAGCAG 
GCGGTTGCCG TTGCAGGTTT CCGCCCGCAG GACAACAGCA TGACTCTGAG CCTTTCGGGC 
AACGACACTG ACAACGTCAT CACCTTCGTA TACATTCCGA AGTCGGAGAC GACCAGCTAT 
AAGGTTCGTT ACGTCATCGC TGACGGTGAG ACTGGCGCCG GTACTGCAGT TGCAGCCGAG 
AAGAACCTTA CGGGTGTCCC GGGTGACACC ACGTCTGTCA TCGAGCTGGC TGCAGCGGTC 
GACTATGACG CGCTGTATGA GGCAGTACCC GAGCTGAACG GCGTGGAGTT CTTCCCCGAC 
GCGGTCGAGA AGGAGCTCGT TCTGGCCGCT GACGAGGCTC AGAACGTTCT TACGTTCTAC 
TACTCCAGCT TCAAGAACGT TAAGGTCACC GTCAACTACG TTGACATGAA CGGCGACCCG 
ATTCCTGGCA TGGATTCGCA CACCGAGGTT CTGAAGGTCG GCAAGACCTT CACGCTCGCC 
CGCACGCCCA TTGCTGGCTG GGAGCTCTAT GCCGCCGTTG AGGGAAGCGG CACTACTGGC 
ACTGCTGCCG GCAGCAGCTA CAAGATCACT GACGAAGTTG CTGCTGGCGA CGGCCTGACC 
TTCACGCTGG TCTACCAGAA GAAGGCCACC ATCACCGTGA ACAGCCAGAG CAGGACATAC 
AACGGTGAGG TGCTGACGCT TCCTGCAGCC CTGAACGACC AGGTGACCGT CGAGGGTCTG 
CTCGACAGCG ACACGCTGAC CGCCCTTGAG TACACGTACA CTAACGCCGA CGCCGAGAAC 
GGTCGTCGCA ACGCCGGCAC CGCCACGGTG ACGCCGAAGA ACGCCACCAT CATTGGCAAG 
GGTGCAACCA ACTCGAACTA CTACAAGGTT CGCTACATCA GCGGCACCCT CGAGGTGACC 
AAGATCAACG TTACCGTCCG TATCGAGCCT GACCGCTGGA CTGGCGCGAA GTACAACGGC 
ACTGAGTACA AGGCTGGTTT CACTAACAGC AACAAGCGTG TCGAAGACTA TATCCTCATA 
AGCGACGACG GCTATGCGAA CGCGCATCGT AATGATATCT GGAACACTAT CAAGGGTCTC 
GAGGGCGTTA ACGAGGGCGG CGCTGGCCTC GGCTATTACG GCATCGCCAA GACTGACGCT 
GGCGACTACA CCTACAATAT TGGATTCACC GACGCCATGC TGCCTGAGGA CAACAACTAC 
AGCGTGAACC TGTTTGTCCG CTCGGGCCGC CTGCAGATCC TGCCTGCCGA GCTGACGGTT 
ACCACGGGTT CTGCTGAGAA GGCCTACGAC GGAACTGCGC TAACCAAAGA CGAGGCGAGT 
CTTCGCGGCC TGGTTGCTGC TGACGAGGGC AAGGCTACCG TCGCCGCTAC AGGCACCATC 
ACCGATCCTG GTTCTGCGCC CAACAGCTAC ACCATCACGT GGGGCGATGT TAATCCTAGC 
AACTACACCA TTAAGGAAAA CCTCGGTACC CTTACGGTTA CGGAGGCAAC CCTGAACGTC 
ACTGTTGCCG ACAAGACCGT CACCTACAAC GGCGAGGAGC AGAATGGCTA TGCCCAGACC 
GATTCCTCGG AGTATACGGT TACCGGTCTT GCAAATGGCC ATACTTTGAA CATCGAATAC 
ACGCCCGCCA AGGGTACGGA TGCGGGCACG TATGAGAACG GGTCGTTTGC GGAGACGTTT 
ACCGTCACTG ATGCTGATGA CAAGGATGTC ACTGAGTACT ACACGCTCGG CATTCTGACG 
CCTGGCAAGC TGACGATTGA GAAGCTGCCT GTTGTCGTTA CTATCGTGGG CGAGCACGAA 
ACCAGCGTTT ACGATGGCAT TACGCACGGT GTTTCCGGAT TTACTGCCGA GGCCGATAAT 
TCGCTTTCCC TACAGTCAAC CAACGTAGGC GTGACCGCGC TTGCGCGAGC TGCGGAAAGT 
GGCGTCGGCC ATGAACAAAT GGCGGAGCAC CCTTTCCACT TTGGGCCATT TCTCCTCGGC 
CCGCTTGACC CTGAACAGGT ACGCGTACCA GTTCAGATAT GA 

 

Protein sequence

MLEKSFVHIS RDTRQLASKA LAILLTISLS MMTWNAASIS TAFAGENDES LTVTDDTLLV 
DGDDTQSDGE EVTTTPESEP PAESESAADP ESAAEEPEAS EPEAPAVDED AEADSEAAQP 
EAAADEEAEE TAGTLNDSYD GVAVTVSDPN GTLPADTELV LGPSSVTKED AQAAFEDEIV 
DFKAVDISFV DKDGKPVKPA ENVKVTLSGA TVASGQTLHV LHGTEPISAT IDGGSATFET 
KDFSPYALVV TSPVNDKAKL AATRDAKAGE DEATEEGGEE AAPETWTVTF YDRNANVVNA 
IEVVKGEAIG DLPDVPYYED NTGVWYVGSY DNYGTPTYGE GPISSTYIPT ENTSIIPKYE 
LINYTVTFYT DETKSKVVDT RTVNADSNYG VNDMPTVPTK TGYSSKWVYS GGDFDNTVAV 
SGDTDVWADY TQNTFTVTYM VESEPYQTDT YYYGDVITSE DLPSDPAIEG KQFIGWRLND 
AEFTGGEVKS NLTVTAEFES EYKVSFTVED TGEVLSQYYR NDGEAIGTMP QNPFVAGKVF 
EKWVDSETGE EVTAATVVNG DMTVVAQFRT IDIYNIKAEY YYLNDRGEEV IFNTDLIQTD 
KLPYTITAPA STQTDSTEVS GGPVYYATNQ VVEVAADDFD GDTATVRIEY VEHTAEYDFV 
YMLKNLDGNG YTEIDRTEDV KGVLHSTVTP TVKSYDYAAF ESAETAEITQ ATGQEVHVYY 
TRKNFPVSYD STGGSYVAGA TVPYGTEYTV SSADPTRDGY TFEGWYLDEA CTKAAGSTVT 
VNGETTLYAN WEGDEVDYTI VYMFEKYNDT GTQSSYVYDN SRTGTGTVGT TVQASSAPSV 
TRTGWEVDTT KNASSSVVIA ADGSSVLYVY YKLTEYTMTF DRNHQSRVSD YIIRPNGTTT 
TNTYSFNVKL GQDISSLWPS AGSNYYSFMG WQKNGQGTRY VTKQLIMNTD LLPSSGKTQN 
WKASWGNAYT FTVNYYLQNA DDDGYTRSET YSQTYNADSY GITPKVISGY TFDHGNNEDY 
TFTYNLYYNR NTYTIDYYYG STRLDTISNV KFDANINKAP YIWTPTAEQC GVDSDYTFAG 
WYADSGLTTP YNFSTMPASN LVLYAKWTPP TFDVTFVDGE DASTVYSTVE DVAKYSMVSA 
PSETPSKDGY VFDGWYTTAD GSELFQWTTQ ITENTTIYAH WTPKTLSYTV KYVDQAGNDV 
ASPKTITNPT FTVGQEITEQ AVAVAGFRPQ DNSMTLSLSG NDTDNVITFV YIPKSETTSY 
KVRYVIADGE TGAGTAVAAE KNLTGVPGDT TSVIELAAAV DYDALYEAVP ELNGVEFFPD 
AVEKELVLAA DEAQNVLTFY YSSFKNVKVT VNYVDMNGDP IPGMDSHTEV LKVGKTFTLA 
RTPIAGWELY AAVEGSGTTG TAAGSSYKIT DEVAAGDGLT FTLVYQKKAT ITVNSQSRTY 
NGEVLTLPAA LNDQVTVEGL LDSDTLTALE YTYTNADAEN GRRNAGTATV TPKNATIIGK 
GATNSNYYKV RYISGTLEVT KINVTVRIEP DRWTGAKYNG TEYKAGFTNS NKRVEDYILI 
SDDGYANAHR NDIWNTIKGL EGVNEGGAGL GYYGIAKTDA GDYTYNIGFT DAMLPEDNNY 
SVNLFVRSGR LQILPAELTV TTGSAEKAYD GTALTKDEAS LRGLVAADEG KATVAATGTI 
TDPGSAPNSY TITWGDVNPS NYTIKENLGT LTVTEATLNV TVADKTVTYN GEEQNGYAQT 
DSSEYTVTGL ANGHTLNIEY TPAKGTDAGT YENGSFAETF TVTDADDKDV TEYYTLGILT 
PGKLTIEKLP VVVTIVGEHE TSVYDGITHG VSGFTAEADN SLSLQSTNVG VTALARAAES 
GVGHEQMAEH PFHFGPFLLG PLDPEQVRVP VQI