| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_11330 |
|---|
| Symbol | |
|---|
| ID | 8395024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 1291643 |
|---|
| End bp | 1293151 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644985891 |
|---|
| Product | putative cell wall binding protein |
|---|
| Protein accession | YP_003143517 |
|---|
| Protein GI | 257063845 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5263] FOG: Glucan-binding domain (YG repeat) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.307599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAG CTATACATCG GGCTTTTCTG ACATCGGTTC TGCTTGCGTT TTGCATGGGG
TGCTTGCTGG TCGCGTTGCC CCAGCCGGCA TTCGCTGACA GCCACTATCC CGATCCGGAT
CGGATTTTCT TGGACGGCAT GCGCTACTCC GAAGGGCATC CCGCAGGCGC GTCGTACAAC
CCGAGCACGG GCGTGCTCAC GTTGAACAAC TACAACGGCG GCGGCATCTA CGTGCAGCAC
CCGGAGAGCT TCGAGGCGGA AACGCTGACC ATCGACCTGA AGGGCGACAA CGTCGTCACC
TGCATAAACG CCGGCAATGA CGCAGGCATC GACATATCGG GCAGTGGAAG CGACCTGATC
ATCACCAGCG CCGGCGGGGG AACGCTGACC GTTACCAGGG AAGAAGGCAG TACGTCTGTC
GGAGCGGTCG ACGGTATATT CGTCAATCGC GGCATCTGCA TTTCCGGCAA TGCGGTTGTC
TACGTGAACG TGTCGAGCAT CAGCAGCTCA AGCCCATACG TTACCGGCAT TTCGAGCGCG
AATTCCAACA TCGAGGTAAA GGACCATGCG TCGCTCGACA TTTTTGTTTC GGCGGAAACG
GCCGCGGGCT GCTACGGCAT CCAGACGTAC GGCAATGACA AAGGCCTGAT GATCTCCAGC
GACAAGGCGG TCAGCATCGA GTGTTACAGA AACGATGGCG GCGTGACGCA CGGCCTGCAC
GACCAGCATA CGACCGTGCC GTTCATGTTC TCGAACACGC CGAAGGTGAC CATCAAGGCG
AACGCGGTGT GGACCAGCAA CAGCGTCAAC GAGAAGGATT ACCTGGTGGA CGGCTACTCG
CAGGAAATCA CCGGCTACGG AAGCGATTCC GTGTATGTGT ACGAGATTCC TTACGAGAAT
TGGGGCTGGA TCAAGGTCGG CACGAAATGG CGGTTCTACA TGGGCGGCGG CGCGTATATA
ACCAGCAGCT TCTTCACCGA CAAGAACAAG ACGTACTACT TCGGCGACGA TGCGTTCATG
GTCACCGGCT GGAAGAAGAT CGACGGTACC TGGTATTACT TCGAGTCGAA CGGCGCTATG
AAGATCGGTT GGGTGAAAGA CGGCGGCAAG TGGTACTACA CCGCCATGGG CGGCGGCATG
GTGAAAGGCT GGCAGAAGAT TTCGGGCACG TGGTACTACT TCAACGGCTC GGGCGTCATG
CAGACTGGCT GGCAGGCCAT CGGCGGGAAG TGGTATTGGT TCACGGACAG CGGTGCTATG
GTCACCGGCT GGGCGAAGAT TTCCGGCAAG TATTACTATT TCGACTCGTC GGGCGCCATG
CAGAAGGGCT GGCTGAAGAG CGGCGGCTCG TGGTACTACC TGAACAGCTC GGGCGCCATG
GTCACCGGCT GGGCGAAGAT CTCGGGCACG TGGTACTACT TCTTCAGCAA CGGCAAGATG
GCCACAGGCA CGCAGACGAT CGGCGGCAAG ACCTACCGCT TCGCCTCCAA CGGAGCCTGG
TTGGGGTAA
|
|---|
| Protein sequence | MKTAIHRAFL TSVLLAFCMG CLLVALPQPA FADSHYPDPD RIFLDGMRYS EGHPAGASYN
PSTGVLTLNN YNGGGIYVQH PESFEAETLT IDLKGDNVVT CINAGNDAGI DISGSGSDLI
ITSAGGGTLT VTREEGSTSV GAVDGIFVNR GICISGNAVV YVNVSSISSS SPYVTGISSA
NSNIEVKDHA SLDIFVSAET AAGCYGIQTY GNDKGLMISS DKAVSIECYR NDGGVTHGLH
DQHTTVPFMF SNTPKVTIKA NAVWTSNSVN EKDYLVDGYS QEITGYGSDS VYVYEIPYEN
WGWIKVGTKW RFYMGGGAYI TSSFFTDKNK TYYFGDDAFM VTGWKKIDGT WYYFESNGAM
KIGWVKDGGK WYYTAMGGGM VKGWQKISGT WYYFNGSGVM QTGWQAIGGK WYWFTDSGAM
VTGWAKISGK YYYFDSSGAM QKGWLKSGGS WYYLNSSGAM VTGWAKISGT WYYFFSNGKM
ATGTQTIGGK TYRFASNGAW LG
|
|---|
| |