Gene Shel_10600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_10600 
Symbol 
ID8394951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1209048 
End bp1210193 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content64% 
IMG OID644985818 
Productexonuclease SbcD 
Protein accessionYP_003143444 
Protein GI257063772 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000211311 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGCTGC TGCATGTATC CGACCTGCAC ATAGGCAAAC GCGTCCACGA GTTCCCGATG 
ATCGAGGATC AGCGCCACAT CCTGGCCCAG ATCGTCGACA CGATTCGGGA ACGGGACGTG
GACGCGCTGC TCATCGCGGG CGACATCTAC GACAAGTCCT CCCCCAGCGC CGAGGCCGTG
GCACTATTCG ACGATTTCCT GTGCGCCGTG GCCGACCTGA ACGTGCCGTG CCTGGCCGTC
GCCGGCAACC ACGACTCGCA GGAGCGCATC GCCTACGCCT CCCGTCTTCT GGCGAGCCGC
AACGTGTACC TGTCCCCCGT GTTCGACGGC GCCATCGACC ATGTCACGCT GCATGACGAG
CACGGCCCCG TGACGTTCTG GCTCATCCCG TACCTGCGGT TCTCGGAAAT CAAATCCTGT
TTTGACGAGT TCGACGGCGA CTACACCGAC GCCATGGCGA AGCTGATCGG GCAAAGCGGC
GTGAACCCCG AAGAACGCAA CGTCGCGCTG GCCCACCAGT TCGTCACCTG GCAGTCGGTG
CAGCCCGAAC GCTCGGATTC GGAAATCGGC AACATCGGCG GCGTGGACAA CATCGACGCC
CGCGCCTTCG ACGTGTTCGA CTATGTGGCG CTGGGCCACA TCCACCGGCC GCAGCGTATC
GGCCGCGACA CCGTCCGATA CAGCGGCTCG CCCCTCAAAT ACTCGATTTC GGAGGCCCCG
TGGCCCAAGA GCATGCCGCT GGTCACCCTT GGGAAGAAAG GCTCGGTTGA CTTCGAGCTC
GTCCCCTTTA AGCCTTTGCA CGACCTGCGC GAGATTCGCG GGCCGCTTGC AGACCTCACG
TCCCCGGACG TGGTGGGCGC CGCCGACGCC GAAGACTACC TGCATGTGAC GCTGACCGAC
GAGGAGCCTT GGATCGACGC CATGAGCAGG CTCCGCGAGC ACTACCCCAA CGTCATGCGG
CTGGACTACG ACAACGCCGC CACCCGCTCC GCGTCGCAGG CGGCCGTTAG CGCTCCCGGC
GAACTGGAAT CGATGTCGTC CGAGGACCTG TTCGCCGAGT TCTTCGAGAT GCGGACGGGC
ATCCCTTTGA CGCAAGCCCA GACAGACCTG GTGCATGCCG TCTTGACCGA ATGCGGGGCG
AAGTAG
 
Protein sequence
MKLLHVSDLH IGKRVHEFPM IEDQRHILAQ IVDTIRERDV DALLIAGDIY DKSSPSAEAV 
ALFDDFLCAV ADLNVPCLAV AGNHDSQERI AYASRLLASR NVYLSPVFDG AIDHVTLHDE
HGPVTFWLIP YLRFSEIKSC FDEFDGDYTD AMAKLIGQSG VNPEERNVAL AHQFVTWQSV
QPERSDSEIG NIGGVDNIDA RAFDVFDYVA LGHIHRPQRI GRDTVRYSGS PLKYSISEAP
WPKSMPLVTL GKKGSVDFEL VPFKPLHDLR EIRGPLADLT SPDVVGAADA EDYLHVTLTD
EEPWIDAMSR LREHYPNVMR LDYDNAATRS ASQAAVSAPG ELESMSSEDL FAEFFEMRTG
IPLTQAQTDL VHAVLTECGA K