Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_10600 |
Symbol | |
ID | 8394951 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 1209048 |
End bp | 1210193 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644985818 |
Product | exonuclease SbcD |
Protein accession | YP_003143444 |
Protein GI | 257063772 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000211311 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCTGC TGCATGTATC CGACCTGCAC ATAGGCAAAC GCGTCCACGA GTTCCCGATG ATCGAGGATC AGCGCCACAT CCTGGCCCAG ATCGTCGACA CGATTCGGGA ACGGGACGTG GACGCGCTGC TCATCGCGGG CGACATCTAC GACAAGTCCT CCCCCAGCGC CGAGGCCGTG GCACTATTCG ACGATTTCCT GTGCGCCGTG GCCGACCTGA ACGTGCCGTG CCTGGCCGTC GCCGGCAACC ACGACTCGCA GGAGCGCATC GCCTACGCCT CCCGTCTTCT GGCGAGCCGC AACGTGTACC TGTCCCCCGT GTTCGACGGC GCCATCGACC ATGTCACGCT GCATGACGAG CACGGCCCCG TGACGTTCTG GCTCATCCCG TACCTGCGGT TCTCGGAAAT CAAATCCTGT TTTGACGAGT TCGACGGCGA CTACACCGAC GCCATGGCGA AGCTGATCGG GCAAAGCGGC GTGAACCCCG AAGAACGCAA CGTCGCGCTG GCCCACCAGT TCGTCACCTG GCAGTCGGTG CAGCCCGAAC GCTCGGATTC GGAAATCGGC AACATCGGCG GCGTGGACAA CATCGACGCC CGCGCCTTCG ACGTGTTCGA CTATGTGGCG CTGGGCCACA TCCACCGGCC GCAGCGTATC GGCCGCGACA CCGTCCGATA CAGCGGCTCG CCCCTCAAAT ACTCGATTTC GGAGGCCCCG TGGCCCAAGA GCATGCCGCT GGTCACCCTT GGGAAGAAAG GCTCGGTTGA CTTCGAGCTC GTCCCCTTTA AGCCTTTGCA CGACCTGCGC GAGATTCGCG GGCCGCTTGC AGACCTCACG TCCCCGGACG TGGTGGGCGC CGCCGACGCC GAAGACTACC TGCATGTGAC GCTGACCGAC GAGGAGCCTT GGATCGACGC CATGAGCAGG CTCCGCGAGC ACTACCCCAA CGTCATGCGG CTGGACTACG ACAACGCCGC CACCCGCTCC GCGTCGCAGG CGGCCGTTAG CGCTCCCGGC GAACTGGAAT CGATGTCGTC CGAGGACCTG TTCGCCGAGT TCTTCGAGAT GCGGACGGGC ATCCCTTTGA CGCAAGCCCA GACAGACCTG GTGCATGCCG TCTTGACCGA ATGCGGGGCG AAGTAG
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Protein sequence | MKLLHVSDLH IGKRVHEFPM IEDQRHILAQ IVDTIRERDV DALLIAGDIY DKSSPSAEAV ALFDDFLCAV ADLNVPCLAV AGNHDSQERI AYASRLLASR NVYLSPVFDG AIDHVTLHDE HGPVTFWLIP YLRFSEIKSC FDEFDGDYTD AMAKLIGQSG VNPEERNVAL AHQFVTWQSV QPERSDSEIG NIGGVDNIDA RAFDVFDYVA LGHIHRPQRI GRDTVRYSGS PLKYSISEAP WPKSMPLVTL GKKGSVDFEL VPFKPLHDLR EIRGPLADLT SPDVVGAADA EDYLHVTLTD EEPWIDAMSR LREHYPNVMR LDYDNAATRS ASQAAVSAPG ELESMSSEDL FAEFFEMRTG IPLTQAQTDL VHAVLTECGA K
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