| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10420 |
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| Symbol | |
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| ID | 8394933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1185756 |
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| End bp | 1187114 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644985800 |
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| Product | tRNA:m(5)U-54 methyltransferase |
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| Protein accession | YP_003143426 |
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| Protein GI | 257063754 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00301359 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000151314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATAAAA CAGTTGACAT CATCGGCGCC GGTCTTGCCG GCAGCGAAGC CGCCCTCCAA
TTGGCGCAGC GCGGCGTGCA TGTGCGTCTT TTCGAGATGC GCCCCCAGGT CAAAACGCCT
GTCCATAAGA CGGATGGGTG TGCCGAGCTC GTGTGCTCGA ACTCGTTGAA AAGCATGAAA
CCGCAAAGCG CCGCCGGCAT GCTGAAGTCG GAGCTGAAGG CTCTTGGAAG CAATCTGATA
GGGTTCGCCT ACGATTCCAA AGTCGATGCT GGCGGGGCTT TGGCGGTCGA CAGGGATGAG
TTCTCCCGTT TGACGACCGA GGCCGTGCGC AACCATCCGC TTATCGAATA CGTGGTGGGG
GAGGTCGCCG AACCTGATTT TACCGACGGC GCAGACGCTG TGGTGCTGGC CAGCGGTCCT
TTGACTTCCG ATGCGTTGGC TGCGTGGGTC TCTGAGAAAA CGGGCAGCGA GAACATGGCG
TTCTACGATG CAGCCGCTCC CATAGTGATG GCGGATTCCT TGAATATGGA CGTCCTGTTC
AGGCAGTCCC GGTACGAGGA TGAAGCCCCT GGCGACTATC TGAACGCACC GTTCACTCGA
GAACAGTACG ATGCGTTCAT CGACGAGCTG GTGGCGGCCG ACCGTGTCAT CCGACGTGAT
TTCGAGACGA AAGACCTATT CCAAGCATGC CAGCCCATCG AGGAGATCGC CCGCAAAGGG
CATGACGCTC CGCGTTTCGG AACATGCAAA CCTGTGGGTC TTACTGACCC CGCAACGGGT
CGTCGTCCTT GGGCCGCCGT GCAGCTTCGT GCAGAAAACG CGCAGAACAC CGCGTACAAC
CTGGTAGGAT TCCAGACGAA TCTGACGTTT CCCGAGCAGA AGCGCGTTTT CAGCATGATT
CCGGGTCTCG AGAACGCCGA GTTCGTGCGA TACGGCGTCA TGCATCGCAA CACGTTCATC
CAGGCGCCGG GCCTGGTGGA GCGATCCCTT CGTTTGAAGG TGGAAACGCC AGCGCCTGTG
TTCGTGGCGG GCCAGCTTTC GGGCACCGAG GGGTATTGCG AGGCCATCAT GTCGGGCCTG
ATGTGCGCTT TGAACGTATA TGCGCTGCTG AACGGCATCG AGATGCCCGC CATGCCTGAG
ACGACCGCTT TCGGGTCGCT GCTTGCCTAC GCAACAGATC CTCAGACCGA GGATTACCAG
CCCATGCACG TGAACTTCGG CATCCTGCCG CCTCTCGAGC ACCATGAGCG GAATAAGAAG
CTTCGTTACG AGCAGTATGC CCAGCGAGGC GGCCAGGCCA TGGAGGCGTA CGTCGAGAAG
CTTCGTGAAT CGGGGCTGAT GGAGCGCGTC CATGTCTGA
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| Protein sequence | MNKTVDIIGA GLAGSEAALQ LAQRGVHVRL FEMRPQVKTP VHKTDGCAEL VCSNSLKSMK
PQSAAGMLKS ELKALGSNLI GFAYDSKVDA GGALAVDRDE FSRLTTEAVR NHPLIEYVVG
EVAEPDFTDG ADAVVLASGP LTSDALAAWV SEKTGSENMA FYDAAAPIVM ADSLNMDVLF
RQSRYEDEAP GDYLNAPFTR EQYDAFIDEL VAADRVIRRD FETKDLFQAC QPIEEIARKG
HDAPRFGTCK PVGLTDPATG RRPWAAVQLR AENAQNTAYN LVGFQTNLTF PEQKRVFSMI
PGLENAEFVR YGVMHRNTFI QAPGLVERSL RLKVETPAPV FVAGQLSGTE GYCEAIMSGL
MCALNVYALL NGIEMPAMPE TTAFGSLLAY ATDPQTEDYQ PMHVNFGILP PLEHHERNKK
LRYEQYAQRG GQAMEAYVEK LRESGLMERV HV
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