| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10310 |
|---|
| Symbol | |
|---|
| ID | 8394922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1175522 |
|---|
| End bp | 1176547 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644985789 |
|---|
| Product | putative TIM-barrel protein, nifR3 family |
|---|
| Protein accession | YP_003143415 |
|---|
| Protein GI | 257063743 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.193475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000000180311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGGC CCCTTAGCGA CCTTGCACCT GCCGGGCGCG TTCCCGTGGT TCTCGCCCCC
ATGGCGGGTG TGAACGACGT CATGTACCGC AGCATCTGCG TCGAAATGGG CGCCGACCTC
ACATTCACCG AGATGGTGTC TTCAAAGGCG CTTTCGTTCG CCAACGAGAA GACCCGCCGC
CTGCTTGACA CCGCACCCAA CGAGCTGCAT GTGGGCGTGC AGCTGTTCGG CCACGAACCC
GATACCATGG CCCGCGAAGC GGCGTGGGTA GAGGATTCGC TGGGCGAGAA GCTGGTCTGC
ATCGATGTGA ACATGGGCTG TCCTGCCAGA AAGATAATCA AGAAAGGCGA CGGCTCGGCG
CTGTTGAACA CCCCGGATGT GGCACAGCAG ATTGTCCGTC AAATCAAATC CCAGGTCAGT
TGTCCTGTGA CTGTGAAGTT CCGCAAGGGC TTCGCGGCAG GGGAGGACGT TGCCTGCGAT
TTCGCGAAAC GCATGGAAGA CGCCGGAGCC GATTGGATGA CGGTGCATGG GCGTACCACG
GCCCAGATGT ATTCGGGAGA TGCCGATTGG GATGTGCTCG GACGCGTGAA GCGGTCGGTG
TCGGTGCCTG TCATCGGCAA CGGTGACATC AAACGCGGCG AAGACGCCCG CGCTATGGTG
GACGCCACCG GGGTGGACGG CGTGATGATC GCCCGCGGAG CCCAAGGCAA CCCTTGGATT
TTCCCAGAGG CCGCAGCGGC TTTGGCGGGC GAGCCCGCCC CTGCCGAACC GACCGACGAG
GAACGCGTCG CCATGGCTCG CCGCCATGCG TCGATGCTGG ACGGATACAT GGGCAACACC
ATCGTCTACA TGCGCAAACA CGTCATGTGG TATCTGCGCG GCGTTCCTGG CGTGCGCGAA
GCCCGCGGCG CTTTGAACTC CTGCGTCACC ATGGATGATT TCAACCGCGT GCTGGACAAG
ATACTGGTGG ATGCGGCCGA CGTGCGTGCC CGCGAGGCGG CGTACCGCGC TGCGCCTGGC
CGTTAA
|
|---|
| Protein sequence | MSWPLSDLAP AGRVPVVLAP MAGVNDVMYR SICVEMGADL TFTEMVSSKA LSFANEKTRR
LLDTAPNELH VGVQLFGHEP DTMAREAAWV EDSLGEKLVC IDVNMGCPAR KIIKKGDGSA
LLNTPDVAQQ IVRQIKSQVS CPVTVKFRKG FAAGEDVACD FAKRMEDAGA DWMTVHGRTT
AQMYSGDADW DVLGRVKRSV SVPVIGNGDI KRGEDARAMV DATGVDGVMI ARGAQGNPWI
FPEAAAALAG EPAPAEPTDE ERVAMARRHA SMLDGYMGNT IVYMRKHVMW YLRGVPGVRE
ARGALNSCVT MDDFNRVLDK ILVDAADVRA REAAYRAAPG R
|
|---|
| |