Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_09640 |
Symbol | |
ID | 8394855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1105924 |
End bp | 1106673 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644985723 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_003143351 |
Protein GI | 257063679 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.444703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCAGC AGGAAGAGCG CATCGTGCCC ATGCGCGTGC AGAAGTTCCT GGCGCGCGCC GGCGTGGCCA GCCGCCGCAG GTCGGAGGAC CTGATGACGG CAGGGCGCGT CTGCGTGAAC GGGGAAGTGG TGACCGAGCT GGGCGCCAAG GTGGACCCGC GGGTCGACAC CGTGACCGTG GACGGCCGCG AGGTACGCCT GACCGACGGC CCCGTCACCA TCATGCTGAA CAAGCCCTGC GGCTTCATCA CCACCATGTC TGATCCTTAC GGACGAGCAT GTGTGGCCGA GCTGGTGCCC TCCGACGACT ATCCCGGGCT GTTCCCCGTC GGCCGGCTGG ACACCGATAC CTCGGGCCTG CTGCTGTTCT CCACCGACGG CGAGCTGGGA AATTCCCTTC TGCACCCGCG CCACCACGTG GACAAGACCT ACGAGGCCTG CGTGCAGGGG CGCATTTCCG ACGAGGCCCT GCAGACCCTT CGCGACGGCG TGGAGCTGGA CGACGGCGTC ACGTCGCCGG CTGCGGTCAC CCTGGTTTCC CGGTCGAAGG AGAAGTCCCG CATCACGCTG GTCATCCACG AAGGGCGCAC CCGCCAGGTC CGCCGTATGT GCCAGAAGGT GGGCCATCCT GTCTTGGAAC TGCATCGCGC CCAGTTCGGG CCGCTGACCT TGGGCGATTT GCCGGAAGGG TCCTGGCGTG AACTGACGAA GGCCGAAGTG GAGTCGCTGC GCAGCGCCCC GCGCCGGTAG
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Protein sequence | MPQQEERIVP MRVQKFLARA GVASRRRSED LMTAGRVCVN GEVVTELGAK VDPRVDTVTV DGREVRLTDG PVTIMLNKPC GFITTMSDPY GRACVAELVP SDDYPGLFPV GRLDTDTSGL LLFSTDGELG NSLLHPRHHV DKTYEACVQG RISDEALQTL RDGVELDDGV TSPAAVTLVS RSKEKSRITL VIHEGRTRQV RRMCQKVGHP VLELHRAQFG PLTLGDLPEG SWRELTKAEV ESLRSAPRR
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