Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_09420 |
Symbol | |
ID | 8394833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1088310 |
End bp | 1089494 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644985701 |
Product | RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family |
Protein accession | YP_003143332 |
Protein GI | 257063660 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.702533 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTGCAG CCAAAGCTAC GAAAATCGAT GATATTGATA TTGAAGAGCC CCAGGTTGAA GACGATGTCA TGACGGAGGA TGACATCGCA AGCGCAGAAG ACAAAGACGA TACCGCCATC GAAGACGAAG ACTTGCTCGA GGGAATTCCT GAAGAGGAGC TGAAGGCTCC TTCGGCCGCT GCGGCAACAC TCCCCAAGAT CAAGAACAAC CGCTCTTCGC GTTCGCGCGT TCGTCGTTCC GCGGACACGT CGGTGACCAT GCTTACCGGC GACCCTGTTC GCATGTACCT CAAAGAAATC GGCAAAGTCC CGCTGCTTAC CCCTTCGGAG GAAGTCGACT TGGCCATGAA GATCGAGGCC GGCGTCGCCG CTACTGCCGA ACTGGAGAAG GCGGAAGAGG AGGGCGTCGA GCTCGACCGT CGTGAGCGCC GTCGCCTGAC CCGCGTGGAG CAGGTCGGTC TTGACGCGAA AGACCAGCTT ATCGAAGCGA ACCTGCGTCT CGTGGTCTCC ATCGCCAAGC GTTATGTCGG TCGTGGCATG CTGTTCCTGG ACCTCATCCA GGAAGGCAAC CTCGGCCTGA TTCGTGCGGT CGAGAAATTC GACTACACCA AGGGCTTCAA ATTCTCCACG TACGCCACGT GGTGGATTCG TCAGGCCATC ACCCGCGCCA TCGCCGACCA GGCGCGTACC ATCCGCATTC CGGTGCACAT GGTCGAGACC ATCAACAAGC TTGTCCGCAT CCAGCGCCAG CTGCTGCAGG AGCTGGGCCG CGATCCCAGC CCCGAGGAGA TCGGCGAGAA GATGGGCCTG TCTGCAGAGC GTGTGCGCGA GATCCAGAAG CTGAGCCAGG AGCCCGTGTC CCTCGAAACG CCCATCGGCG AAGAGGAGGA TTCCCAGCTC GGCGACTTCA TCGAGGATGA CTCCGCCATC GTTCCCGTGG ACGCGGCCAG CTTCGCTATG ATGCAGGAGC AGCTTTCCAA GGTGCTCGAC ACCCTGGGCG AGCGCGAGCG CAACGTGGTC ATCAAGCGCT TCGGCCTGGA AGACGGCCAG CCTCACACGT TGGAGGAGGT CGGACGGGAG TTCGGCGTCA CTCGCGAGCG TATCCGCCAA ATCGAGAGCA AGACCTTGGC GAAATTGCGT CATCCCAGTC GTTCTTCCAA GTTGAAGGAC TATTTGGAAG ACTAG
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Protein sequence | MSAAKATKID DIDIEEPQVE DDVMTEDDIA SAEDKDDTAI EDEDLLEGIP EEELKAPSAA AATLPKIKNN RSSRSRVRRS ADTSVTMLTG DPVRMYLKEI GKVPLLTPSE EVDLAMKIEA GVAATAELEK AEEEGVELDR RERRRLTRVE QVGLDAKDQL IEANLRLVVS IAKRYVGRGM LFLDLIQEGN LGLIRAVEKF DYTKGFKFST YATWWIRQAI TRAIADQART IRIPVHMVET INKLVRIQRQ LLQELGRDPS PEEIGEKMGL SAERVREIQK LSQEPVSLET PIGEEEDSQL GDFIEDDSAI VPVDAASFAM MQEQLSKVLD TLGERERNVV IKRFGLEDGQ PHTLEEVGRE FGVTRERIRQ IESKTLAKLR HPSRSSKLKD YLED
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