| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09160 |
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| Symbol | |
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| ID | 8394807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | - |
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| Start bp | 1057597 |
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| End bp | 1058922 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644985675 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_003143307 |
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| Protein GI | 257063635 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0844867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAC AAATAACCAT CGAACGCCTT CTTTACGGCG ACGCGGGAAT CGGACACCTG
TCCGACGGCC GCGCCGCATT CGTCGACGGC GCCTGCCCCG GCGACGTCCT CGAGGTTGCG
GTCGAGAAGG ACAACGGTAA CTATCTTACC TGTTCAATTA AGGAAATCGT GTCCCTTTCC
GAACATCGCG TCACCCCGAA ATGCCCCTTG GCATCCGTAT GCGGAGGGTG CGGCTGGCAG
CACGTTGCCT ACGATTGGCA GCTCGTCGAA AAGCGCGCCA ACGTGGTTTC CCAGCTGCAG
CGCACCGCAC ACTTCGACCC CGACCGGGCC GAGGCCATCG TTGCGGAATG CAAACCCTCC
CCCAAGCAGT TCGGATACCG AAACAAGCTT GAATTCGGGT GCCAAATCGA CCCGAAACGT
GGTTTTCTCA TGGGGCTGCA CCGCCGAGGA TCCGACGATG TGCTGCCCGT CGACTCGTGT
CCTTTGGCCC AAGGTCCGCT CAGCAAGACG CCTAAAGCCC TCAAGGGAGC CCTGCGTTAC
CTGAGCGGTT CGAACGACCT GGGCATCTAC CGCGTCGGCG TCAGGCAGTC GGCCCGCACC
CGATCCACCG AGATCGCGCT CTGGACCACC CCCGGTCCCT TCCCCAGAGC GACCGTGGCC
AAAACTCTGG GCAACGCCAT GAAGTGTACG AGCATCGTTC GTGTCATGAC AGGCGAAGGG
AAGAAGGCCC GCAAGCTCAA AGGCGTCGAG CTGCTAGCAG GCGACGGATA TTGGAAGGAA
CGTGTCGCAG GCCAGCCGTT CAAGGTGAGC GCCCCGTCGT TCTTCCAGGT GAACACCGAG
CAGGCCGAAA CCCTGGTGGA ACTGGCCCTG GACGGGCTCG AAATCGACGA AGGCTCAGTG
GTAGCCGACC TGTACTGCGG CGTGGGCACC TTCACCATCC CCATGGCGAA GACCGGCGCC
GAAGTCATGG CGGTCGAAAG CTACGGCTCC AGCGTGCGCG ACCTGCGTCG CATCACCGAG
GAAGAGGGGC TCTACATCGA CGTCATCGGC GGCGATGCCG CCCGCGAGTT GCCGGGCTTG
GGACATCTGG ACGCGTTGCT GGTGGACCCG CCCCGCGCCG GTTTGGACGC GACGATCATT
CCTGCCATAG CCGCGGCCGG TCCCCGTCGA CTCGCCTATG TGAGCTGCGA CCCCGCCACG
TGGGCCCGCG ACGTCAAGCG ACTTGAAGAT CAAGGGTTCG AACTGGTCAA GGCCACGCCG
GTGGACATGT TCCCCCAGAC CCACCATGTC GAAATAGTCA GCATCTTCAC GAACCGCAAG
AACTGA
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| Protein sequence | MSEQITIERL LYGDAGIGHL SDGRAAFVDG ACPGDVLEVA VEKDNGNYLT CSIKEIVSLS
EHRVTPKCPL ASVCGGCGWQ HVAYDWQLVE KRANVVSQLQ RTAHFDPDRA EAIVAECKPS
PKQFGYRNKL EFGCQIDPKR GFLMGLHRRG SDDVLPVDSC PLAQGPLSKT PKALKGALRY
LSGSNDLGIY RVGVRQSART RSTEIALWTT PGPFPRATVA KTLGNAMKCT SIVRVMTGEG
KKARKLKGVE LLAGDGYWKE RVAGQPFKVS APSFFQVNTE QAETLVELAL DGLEIDEGSV
VADLYCGVGT FTIPMAKTGA EVMAVESYGS SVRDLRRITE EEGLYIDVIG GDAARELPGL
GHLDALLVDP PRAGLDATII PAIAAAGPRR LAYVSCDPAT WARDVKRLED QGFELVKATP
VDMFPQTHHV EIVSIFTNRK N
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