| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09080 |
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| Symbol | |
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| ID | 8394799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1051000 |
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| End bp | 1053012 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644985667 |
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| Product | VacB/RNase II-like 3'-5' exoribonuclease |
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| Protein accession | YP_003143301 |
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| Protein GI | 257063629 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.132674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCGTG CGCGCCCCCG CGGCGTTCTC AACATGACTT CCGCCGGATA CGCCTTCGTG
CAGACGGCGG AAGGGGAGTT CTTCATTCCC GCATCCAAAG TGCACGACGC GTTCGACGGT
GACGTGGTCG AGGTGTCGCG CCTGTCTTCC TCTGAACGGG GGAGCTACGC GCAGGCCGGA
CCCGACAGGC CCGCCGCGCG TGTGGTGCGA GTCGTGCTGC GGGCTCATGA ATCCATCGTC
GGTCGCTACG AGGTCGCCGA ACCTTTCGGC ATCGTGGTGC CCGAAGACCC GCGCATCAAG
CACGACATCT TCACGCTGAG GGCGGATGCG CCCCATGTGC AGCATGGCGA CATCGTTCGC
GTGCGGATGA CCGTCTACCC GAATCGCCGC GAGCCGGCAC AAGGCGTGGT GGAGGAGGTT
CTGGGGCATG TCGGAGATGC CGGCATGGAC GTGGAGCTCA TAGTGGCCCG TCACAAGTTG
GAAACCAAGT TCTCGCCGAA GGTCCTGGAA GACGTGGCCC ATGCTGCGGT GGGCGAAGCC
GAGGCGTTGT CGTCCGGCGA TTACCGCGAC ATCCGCAATC GCGTAGTGTT CACCATCGAT
CCGGCGGATG CGAAGGACTT CGACGACGCG CTGTCTTTTG ACAAGGTGGG CGGCTACTTG
CGCCTGGGAG TGCATATCGC CGACGTATCC CATTACGTTC CCTGGAACTC GCCGACCGAC
CTGGAGGCCC GTCGCCGGTC GACGAGCGTG TATCTGGTCG ACCGCGTGGT TCCCATGCTT
CCCGAGGTGC TGTCCAACGA CGTCTGCTCG CTGCGGCCGC GCGAGCCGCG CCGCGCCATG
ACGGTGGATC TGTACCTTAC CGAAACGTTT TCGGTCCATC ACGTGGATGC GTACCCGTCG
ATCATCGAAT CCTGCGCCCG GCTTGACTAC GACACGGTCC AGGAATGCTT CGACCGCGTT
GCTGGAGGCG AACGTCCTGC CGCCGTTTCC ATGTTGCAGG ACGTTTGCAA AGATCCCGAA
TCGGTGCTGG TCCGCCTGTT GGGGCTCAAA CGCGTCTCAG TCGGATTGCA CGAACGCCGC
CTCAAACGGG GAGGTCTGGA CTTCGATGGC GTCGAAGCGA AGGTTCGGCT GGATGACGAG
GGTCGTCCCG TGGGCGTCGA TATCCGAAAG ACAACCCAGG CGACGTCCCT GGTCGAAGAG
GCTATGATTG CGGCCAACGA GGCAGTGGCC AGGCTTTTGC GCGACGGCGC CATCCCGTCC
ATCTACCGTG TGCACGAACC GCCCGCAACC GGGGACCTGT CGGCGCTGAT TCCGATTCTG
CAGGAGTTCG GATACGACAG CGACGTCTCC ATGTCCCGGT TCGCCGCAGG CGACCCCTTC
GCCATTCAGA AGGTGATCGC CAAGGCGAAG GGCCGGCTGG AGGAGCCGCT CGTGTCCACC
CTTGTGGTGC GCGCGATGAC GCAGGCCCGC TACGTGGACG CCTGCGAGCC GCACTTCGGG
CTGGGAAGCG AGGCATACAC GCATTTCACG AGTCCTATCA GGCGGTATCC CGACCTGGTG
GTGCATCGCA TGCTCAAGGT GAAGCTGTTC GGGCGCACCG AGACCACATC CGCCGAAGAG
GCCGCGCTGG CGACCATTGC GGCCCATGCG TCCGAAATGG AACGCAAGGC CGAAACCGCC
GCCCGCGAAT CCCAGGAGCT CAAGCTGTTC GAGCTTCTGG AGGAACACAT CGGCGAAGAG
TTCGACGGCC TGGTTTCGGG TGTGACGGCG TCGGGCTTCT TCGTGCGGCT GGACGACACG
TCCGAAGGCT TCGTGTCGCT GCGCCGTGCC CAGGAGTATT TCATCCTCGA CCCCGAGCGC
TACACGCTGA CCGGTTCAGA CAGCGGGGTG GTGTACCGGC TGGGAGCCCG CGTCCGCATC
CGCGTGAGGG ACGTGTACCC GTTCGAGCGC AAAGCCGACT TCGATCTTGT GGCGCGGCTG
AGCAGCGCCA CCTTGCCCAA GTACAAGGGA TAA
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| Protein sequence | MNRARPRGVL NMTSAGYAFV QTAEGEFFIP ASKVHDAFDG DVVEVSRLSS SERGSYAQAG
PDRPAARVVR VVLRAHESIV GRYEVAEPFG IVVPEDPRIK HDIFTLRADA PHVQHGDIVR
VRMTVYPNRR EPAQGVVEEV LGHVGDAGMD VELIVARHKL ETKFSPKVLE DVAHAAVGEA
EALSSGDYRD IRNRVVFTID PADAKDFDDA LSFDKVGGYL RLGVHIADVS HYVPWNSPTD
LEARRRSTSV YLVDRVVPML PEVLSNDVCS LRPREPRRAM TVDLYLTETF SVHHVDAYPS
IIESCARLDY DTVQECFDRV AGGERPAAVS MLQDVCKDPE SVLVRLLGLK RVSVGLHERR
LKRGGLDFDG VEAKVRLDDE GRPVGVDIRK TTQATSLVEE AMIAANEAVA RLLRDGAIPS
IYRVHEPPAT GDLSALIPIL QEFGYDSDVS MSRFAAGDPF AIQKVIAKAK GRLEEPLVST
LVVRAMTQAR YVDACEPHFG LGSEAYTHFT SPIRRYPDLV VHRMLKVKLF GRTETTSAEE
AALATIAAHA SEMERKAETA ARESQELKLF ELLEEHIGEE FDGLVSGVTA SGFFVRLDDT
SEGFVSLRRA QEYFILDPER YTLTGSDSGV VYRLGARVRI RVRDVYPFER KADFDLVARL
SSATLPKYKG
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